Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010908.1 Corchorus olitorius cultivar O-4 contig10940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45146

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--150
21
2.3
21
92
0
80
18
44
20
16
1.86
3759--3903
32
4.5
32
87
1
202
23
31
20
25
1.98
6624--6663
15
2.6
16
84
8
55
12
7
12
67
1.41
11559--11849
41
6.9
43
77
13
293
25
10
24
39
1.87
11559--11847
84
3.4
85
86
5
390
25
10
23
40
1.87
11562--11839
125
2.2
128
80
11
299
25
10
23
40
1.87
12745--12775
4
7.8
4
92
0
53
70
0
3
25
1.02
12871--12929
12
4.5
13
85
12
68
28
0
0
71
0.87
12893--12927
3
11.7
3
100
0
70
31
0
0
68
0.90
31317--31358
21
2.0
21
100
0
84
33
28
19
19
1.96
37482--37523
21
2.0
21
90
0
66
38
28
16
16
1.91

Tables:   1

The End!