Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010912.1 Corchorus olitorius cultivar O-4 contig10944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4314
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:3993 original size:71 final size:71

Alignment explanation


    Indices: 3918--4058  Score: 182
    Period size: 71  Copynumber: 2.0  Consensus size: 71

       3908 GGACAAAAAA

                                                    *                        
       3918 ATAAGGTTTTGAC-CCTAGTAGAG-TA-ACAACTTTGCATCTTTTTCATGATCTC-ATAGAGTGA
          1 ATAAGGTTTT-ACGCCTAGTAGAGATATA-AACTTTGC-TATTTTTCATGATCTCTAT-GAGTGA

                      
       3979 AATTAGCATG
         62 AATTAGCATG

                      *                   *   *                              
       3989 ATAAGGTTTTTCGCCTAGTAGAGATATAAAGTTTTCTATTTTTCATGATCTCTATGAGTGAAATT
          1 ATAAGGTTTTACGCCTAGTAGAGATATAAACTTTGCTATTTTTCATGATCTCTATGAGTGAAATT

                 
       4054 AGCAT
         66 AGCAT

       4059 AACTAACTTT


Statistics
Matches: 62,  Mismatches: 4, Indels: 8
        0.84            0.05        0.11

Matches are distributed among these distances:
  70    1  0.02
  71   50  0.81
  72   10  0.16
  73    1  0.02

ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38


Consensus pattern (71 bp):   
ATAAGGTTTTACGCCTAGTAGAGATATAAACTTTGCTATTTTTCATGATCTCTATGAGTGAAATT
AGCATG
Done.