Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010915.1 Corchorus olitorius cultivar O-4 contig10947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5325
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27


Found at i:337 original size:20 final size:20

Alignment explanation


    Indices: 312--351  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        302 CCAAGTCTGC

                                
        312 AGATAAATCCTTTATTTAGT
          1 AGATAAATCCTTTATTTAGT

                                
        332 AGATAAATCCTTTATTTAGT
          1 AGATAAATCCTTTATTTAGT

        352 CCTACCTTGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45


Consensus pattern (20 bp):   
AGATAAATCCTTTATTTAGT
Done.