Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010916.1 Corchorus olitorius cultivar O-4 contig10948, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37919
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:1241 original size:312 final size:312
Alignment explanation
Indices: 676--1295 Score: 1195
Period size: 312 Copynumber: 2.0 Consensus size: 312
666 GTCCATTAGA
676 CAGGGTAGGTAGGTTCTCAAAAGCGGCCCATTTCAGTCTTGAAGCCCGTTTAAGTCACGTGAGTT
1 CAGGGTAGGTAGGTTCTCAAAAGCGGCCCATTTCAGTCTTGAAGCCCGTTTAAGTCACGTGAGTT
* *
741 TTACGTGTTTGTTAGCTCAATTTCTCAAAGGGGAATATGGGTTGTCAAAAATATGTTTGAATATA
66 TTACGTGCTTGTTAGCTCAATTTCTCAAAGGGGAATATGGGTTGTCAAAAACATGTTTGAATATA
*
806 CAATTTTATTGTATCTTTTTAAATAAAAAAGTAAATAAAAAAAAAGTGAAGTGAAGTGTTTTGAA
131 CAATTTTATTGTATCTTTTTAAATAAAAAAGCAAATAAAAAAAAAGTGAAGTGAAGTGTTTTGAA
871 AAAATATGAAATAACAAAATTTTTGTTTCAATTTTTTTCCAAAACACTTATTCTGTTTCTAATAT
196 AAAATATGAAATAACAAAATTTTTGTTTCAATTTTTTTCCAAAACACTTATTCTGTTTCTAATAT
936 TTTAATCTTGAAAACAGAAACAGCCTAACAAACATGTATTCATTGTTTAAGT
261 TTTAATCTTGAAAACAGAAACAGCCTAACAAACATGTATTCATTGTTTAAGT
988 CAGGGTAGGTAGGTTCTCAAAAGCGGCCCATTTCAGTCTTGAAGCCCGTTTAAGTCACGTGAGTT
1 CAGGGTAGGTAGGTTCTCAAAAGCGGCCCATTTCAGTCTTGAAGCCCGTTTAAGTCACGTGAGTT
1053 TTACGTGCTTGTTAGCTCAATTTCTCAAAGGGGAATATGGGTTGTCAAAAACATGTTTGAATATA
66 TTACGTGCTTGTTAGCTCAATTTCTCAAAGGGGAATATGGGTTGTCAAAAACATGTTTGAATATA
*
1118 TAATTTTATTGTATCTTTTTAAATAAAAAAGCAAATAAAAAAAAAGTGAAGTGAAGTGTTTTGAA
131 CAATTTTATTGTATCTTTTTAAATAAAAAAGCAAATAAAAAAAAAGTGAAGTGAAGTGTTTTGAA
*
1183 AAAATATGAAATAACAAAATTTTTGTTTCAATTTTTTTCCAAAATACTTATTCTGTTTCTAATAT
196 AAAATATGAAATAACAAAATTTTTGTTTCAATTTTTTTCCAAAACACTTATTCTGTTTCTAATAT
1248 TTTAATCTTGAAAACAGAAACAGCCTAACAAACATGTATTCATTGTTT
261 TTTAATCTTGAAAACAGAAACAGCCTAACAAACATGTATTCATTGTTT
1296 TGTTTCAAAA
Statistics
Matches: 303, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
312 303 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (312 bp):
CAGGGTAGGTAGGTTCTCAAAAGCGGCCCATTTCAGTCTTGAAGCCCGTTTAAGTCACGTGAGTT
TTACGTGCTTGTTAGCTCAATTTCTCAAAGGGGAATATGGGTTGTCAAAAACATGTTTGAATATA
CAATTTTATTGTATCTTTTTAAATAAAAAAGCAAATAAAAAAAAAGTGAAGTGAAGTGTTTTGAA
AAAATATGAAATAACAAAATTTTTGTTTCAATTTTTTTCCAAAACACTTATTCTGTTTCTAATAT
TTTAATCTTGAAAACAGAAACAGCCTAACAAACATGTATTCATTGTTTAAGT
Found at i:11958 original size:30 final size:30
Alignment explanation
Indices: 11924--11983 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
11914 ATAGTTCATT
*
11924 GCATTTTGTATTGTTTGCTATGTGTGCTTA
1 GCATTTTGTATTATTTGCTATGTGTGCTTA
11954 GCATTTTGTATTATTTGCTATGTGTGCTTA
1 GCATTTTGTATTATTTGCTATGTGTGCTTA
11984 TTTAATAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.10, G:0.22, T:0.53
Consensus pattern (30 bp):
GCATTTTGTATTATTTGCTATGTGTGCTTA
Found at i:26911 original size:14 final size:15
Alignment explanation
Indices: 26882--26923 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
26872 CCTCGCCCCT
26882 CTCTCCACACACTCC-A
1 CTCTCC-CA-ACTCCAA
26898 CTCTCCCAACTCCAA
1 CTCTCCCAACTCCAA
26913 CTC-CCCAACTC
1 CTCTCCCAACTC
26924 GCTACCAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 13 0.52
15 6 0.24
16 6 0.24
ACGTcount: A:0.24, C:0.57, G:0.00, T:0.19
Consensus pattern (15 bp):
CTCTCCCAACTCCAA
Found at i:34236 original size:329 final size:330
Alignment explanation
Indices: 33237--34806 Score: 1643
Period size: 329 Copynumber: 4.8 Consensus size: 330
33227 ATACTTTACA
* ** * * *
33237 TCATCTAACCAAATCTCAGGAACATTGGAATTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
* * ** * * *
33302 TTCAATTTAATTAGAAATTAATTTAGACTAAATAAGAAATATGATATTAAAAGA-GTGAAAAACC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAA-ATGTGAAAAGCC
* * * *
33366 CTCCAATCTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAGAA
130 CTTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
*
33431 ATATTTCGTGTCAATCTTTT-CAAAATTTTAGCCGAAATCGTGTACTAACTAACCATCACGGTTT
195 ATATTTCGGGTCAAT-TTTTGCAAAATTTTAGCCGAAATCGTGTACTAA-T---CATCA-GGTTT
* * * * * * * *
33495 TTCGCTAAAAACGCATTCCGGGGACCCGCCTCAA-TTTTGCATGATTTTTGACTCCGATACTACT
254 TTGGCTAAAAACGCGTTCCGGGG-CCCGGCT-AAGTTTTGCATGATTTTTGGCGCCAAGACTCCT
*
33559 TGAAATATCCCTAT
317 TGAAATATCCATAT
* * * * * *
33573 TTATCTAATCAAAACTCAGCCACATTGGATTTAAGAATTT-TTTTTACAAACATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
* * * * * * *
33637 TTTGATTTAATTAAAAATTAATTCGGAAAAAATAAGAATAACGATATTGAAAACGTCAAAAGCCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAAATGTGAAAAGCCC
* *
33702 TTCAATATTTTTGGCGTTGAAATATATA-TTTTTATGAGTATTTTAGCCAAAAATTGAGGAAATA
131 TTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAA
* * * * * *
33766 TCTTTCGGGTCAATTTTTACAAAATTTTAGCTGAAATCATGTAATAACCATTACA-GTTTTTGGC
196 TATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATCA-T-CAGGTTTTTGGC
* * * * * *
33830 TAAAAAAGCCTTCTGGGGCCTGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAGATA
259 TAAAAACGCGTTCCGGGGCCCGGCTAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATA
33895 TCCATAT
324 TCCATAT
*
33902 TCATCTAATCAAATCTCAGCTACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
* *
33967 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAATGTGAAAAGTCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAAATGTGAAAAGCCC
* * * *
34032 -TCAAATATTTTTGGTGTTTAATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAA
131 TTC-AATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGG-AAA
* * * * * *
34096 AATTTTTCGAGTTATTTTTTGCAAAATTTTAGCCAAAATCGTGTACT-ATCA-CA-GTTTTTGTC
194 AATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATCATCAGGTTTTTGGC
* * * *
34158 TACAAACGCGTTTCGGGGCCTCGACTAAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAAT
259 TAAAAACGCGTTCCGGGGCC-CGGCTAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAAT
*
34223 ATCTATAT
323 ATCCATAT
* * * * * * * *
34231 TCATCTAATAAAATCTAAGCCACGTTGCATTTAAGGATTTGTATTTACGAGCATCTA-AATTTTG
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCA-CCAGAATCTTG
* * *
34295 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAATGATATTAAAAGTGTG-AAAGCC
65 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAAATGTGAAAAGCC
* * * * * *
34359 CTTCAATATTTTTGGTGTTGAATCATATATTTTTTATGAGTATTGTGGCTAAAAATTGAGGAAAT
130 CTTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* *
34424 ATATTTCGGGTCAATTTTTGCAAAACTTTAGCCGAAATCGTGTAATAATCATCATGGTTTTTGGC
195 ATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATCATCA-GGTTTTTGGC
* * * * *
34489 TAAAAACGCGTTCCGGGACCCGGTTCAGTTTTGCATGATTTTTGGCGCTAAGATTCCTTGAAATA
259 TAAAAACGCGTTCCGGGGCCCGGCTAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATA
*
34554 TCTATAT
324 TCCATAT
* ** * * * *
34561 TCATCTAACCAAA--T---CC-C---------AACCA-TTG-TTTTACAAGCATCTGAATCATGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
** * * * * * **
34609 TTTTATTTTATTAGAAATTAATTCGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAGAA-CC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAAATGTGAA-AAGCC
* * * * * *
34673 CTTCAATTTTTTTGCCGTTGAATTATATATTTTTTATGAGGATTGTGGCTAAAAATTGAGGAAAA
130 CTTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * * * * *
34738 TTATTTCGGGTCAGTTTTTGCAAAATATTACCCGAAATCGTGTAATAATTATCACGGTTTTTGGC
195 ATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATCATCA-GGTTTTTGGC
34803 TAAA
259 TAAA
34807 TTCCATGACC
Statistics
Matches: 1054, Mismatches: 161, Indels: 60
0.83 0.13 0.05
Matches are distributed among these distances:
313 63 0.06
314 127 0.12
315 5 0.00
324 1 0.00
325 2 0.00
327 42 0.04
328 87 0.08
329 239 0.23
330 182 0.17
331 58 0.06
332 42 0.04
333 4 0.00
334 72 0.07
335 96 0.09
336 34 0.03
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (330 bp):
TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCACCAGAATCTTGT
TTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAAAAATGTGAAAAGCCC
TTCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAA
TATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATCATCAGGTTTTTGGCTA
AAAACGCGTTCCGGGGCCCGGCTAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATC
CATAT
Found at i:35852 original size:128 final size:129
Alignment explanation
Indices: 35626--35857 Score: 333
Period size: 128 Copynumber: 1.8 Consensus size: 129
35616 TTTTGCAAAA
* *
35626 TTTTAGTCGAAATCGTGTACTAACCATTACGGTTTTTGGCTACAAACGCGTTCCGGAGCCCCAAC
1 TTTTAGTCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAAC
* *
35691 TCAATTTTGCATGATTTTTGGTGCAAAGGCTCCTTGAAAATTGAGAGAAATTTTTTGGGCCAGT
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAAATTGAGAGAAATTTTTTGGGCCAGT
* * * **
35755 TTTTAG-CTGAAATCGTGTACTAACCATCATGG-TTTTGGCTAAAAACGCGTTTCGGGGCCCTGA
1 TTTTAGTC-GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAA
* * *
35818 CTTAGTTTTGCATGATTTTTGGCGCTAAGACTCCTTGAAA
65 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAA
35858 TTCCTATATT
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 62 0.69
129 28 0.31
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (129 bp):
TTTTAGTCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCAAC
TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAAATTGAGAGAAATTTTTTGGGCCAGT
Found at i:36359 original size:333 final size:330
Alignment explanation
Indices: 35755--37919 Score: 2177
Period size: 333 Copynumber: 6.6 Consensus size: 330
35745 TTGGGCCAGT
* * * * *
35755 TTTTAGCTGAAATCGTGTACTAACCATCATGG-TTTTGGCTAAAAACGCGTTTCGGGGCCCTGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGGC
* * * ** *
35819 TTAGTTTTGCATGATTTTTGGCGCTAAGACTCCTTGAAAT-TCCTATATTCATTTAATCAAATCT
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATAT-CTATATTCATCGAACCAAATCT
* * * * * * * * * *
35883 AAACTACATTGAATTTAATGATTTATTTTTACGTGCACCCTGAATCTTGTTTCGATTTGATTAGA
130 CAGCCACATTGCATATAAGGATTTGTTTTTACGGGCA-TCTGAATCTTGTTTCGATTTAATTAGA
* * * * * *
35948 AATTAATTC-AG-AAAAATATGAAAAACGATATTAAAAGAGTGAAAAGTCTC-CAATCTTTTTTG
194 AATTAATTCGGGAAAAAAT-TGAAAAACGATATTAGAAGCGTGAAAA-TCCCTCAATATTTTTGG
* * * * **
36010 CGTTGAATTATATATATTTTATGAGTATTGTGGCTAAAAATTGTGGAAAACCTTTTCGGGTCAGT
257 CGTTGAATTATATAT-TTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGT
36075 TTTTGCAAAA
321 TTTTGCAAAA
* * * *
36085 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTTGCTAAAAACGCATTCCGGAGCCACG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGG--TTTTTGGCTAAAAACGCGTTTCGGAGCCCCG
* * *
36150 GCTCAATTTTGAATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATT
64 GCTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATC
* * * * *
36215 TCAGCCACAGTGCATATAAGGATTTGTTTTTTCGGGAATTTGAATCTTGTTTCCATTTAATTAGA
129 TCAGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGA
** *
36280 AATTAATTCGGGGAAAAAATTGAAAAACGATATTAGAAGTTTGAAAATCCCATCAATATTTCTGG
194 AATTAATTC-GGGAAAAAATTGAAAAACGATATTAGAAGCGTGAAAATCCC-TCAATATTTTTGG
* * *
36345 CGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGACGAAAAAAATTTCGGGTCAGT
257 CGTTGAATTATATA-TTTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGT
*
36410 TTTTACAAAA
321 TTTTGCAAAA
* * * * *
36420 TTTTAGCCGAAATCGTGTACTATCCATCACGGTTTTTGACTACAAACGCGTTTTGGAGCCCCGGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGGC
*
36485 TCAATTTTGCATTATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
* * * * * * *
36550 AGCCACATTGGATACAAGGATTTGTTTTTACGAGTATCTGAAACTTTTTTCGATTCAATTAGAAA
131 AGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * * * *
36615 TTAATTCGGAAAAAAATGGAAAAAATGGTATTAGAAGCGTGGAAAA-CACTGCAATCTTTTTGGC
196 TTAATTCGGGAAAAAATTG-AAAAACGATATTAGAAGCGT-GAAAATCCCT-CAATATTTTTGGC
* * * *
36679 GTTAAATTATTTATTTTTATAAGTATTGTGGCAAAAAATTGA-GAACAAATTTTTCGGGTCAG--
258 GTTGAATTATATATTTTTCTAAGTATTGTGGCAAAAAATTGAGGAA-AAAATTTTCGGGTCAGTT
36741 --T------
322 TTTGCAAAA
* * ** *
36742 TTTTAGCCGAAATCGTGTA-TAAACCATCACGATTTTTGCCTAAAAACGTATTTCGG-GACCTCG
1 TTTTAGCCGAAATCGTGTACT-AACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAG-CCCCG
* * * * ** * * * *
36805 ACTCAGTTTTGCATGGTTTTTGACATAAAGACTCCTT-ATAATATCAATGTTCATCTAACCCAAT
64 GCTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGA-AATATCTATATTCATCGAACCAAAT
* * * * * *
36869 CTTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAG
128 CTCAGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAG
** * * * *
36934 AAAAAAAATC-GGATAAAAATATGAAAAACGGTATTAGAAGCGTGAAAAACCCTTAAGT-TTTTC
193 AAATTAATTCGGGA-AAAAAT-TGAAAAACGATATTAGAAGCGTGAAAATCCCTCAA-TATTTT-
* * * *
36997 TAGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGACGAAAAAATTTTCGTGTA
254 TGGCGTTGAATTATATA-TTTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTC
37062 AGTTTTTGCAAAA
318 AGTTTTTGCAAAA
* * ** * *
37075 TTTTAGTCGAAATCGTGTACTATCCATCACGGTTTTTGGCTTCAAACGCCTTTCGGAGCCCCAAG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCC-GG
* *
37140 -TCAATTTTGCATGATTTTTTGCGCAAAGACTCCTTGAAATATCTATAATCATCGAACCAAATCT
65 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCT
* * * * *
37204 CAGCCACATTACATATAAGGTTTTGTTTTTTCGGGCATCTGAATCGTGTTTCCATTTAATTAGAA
130 CAGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAA
* ** * * * *
37269 ATTAATTCGGGAAAAAAATAGAAAAGTGATAATAAAAGTGTGAAAATCCAGTCAATATTTTTGGC
195 ATTAATTCGGG-AAAAAATTGAAAAACGATATTAGAAGCGTGAAAATCC-CTCAATATTTTTGGC
* * *
37334 GTTGAA-TATAT-TTTTTGTTAAGTATTGTGGAAAAAAACTGAGGAAAAAATTTTCGGGTCAGTT
258 GTTGAATTATATATTTTT-CTAAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGTT
37397 TTTGCAAAA
322 TTTGCAAAA
* ** * * * *
37406 TTTTAGTCGAAATTATGTACTAACCATCACGGTTTTTGGCTAGAAACACGTTCCGGAGCCCCAGC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGGC
*
37471 TCAATTTTGCATGA-TTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
* * * * *
37535 AGCCACATTAG-AAATAAGTATTTGTTTTTACGGGCATCTAAATCTTGATTCTATTTAATTAGAA
131 AGCCACATT-GCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * *
37599 ATTAATAT-GGG-AAAAA-GGAAAAACGATATTAGAAGCGCGAAAAGCCTGTCAAT-TTTTTGGC
195 ATTAAT-TCGGGAAAAAATTGAAAAACGATATTAGAAGCGTGAAAATCC-CTCAATATTTTTGGC
* * * *
37660 GTTGAAATATATATTATTTCTGAG-AGTTGTGGTAAAAAATTGA-GAGAAAACTTTTCGGG-C--
258 GTTGAATTATATATT-TTTCTAAGTA-TTGTGGCAAAAAATTGAGGA-AAAAATTTTCGGGTCAG
*
37720 ------C--AG
320 TTTTTGCAAAA
* * *
37723 TTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTCGCTAAAAACGCGTTTCGGGGCCCCAGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCC-GG
* * * ** * * ** **
37788 CTTAGTTTTGCATGAATTTTGGCGCCGAGACTCCTTTAAATTTCTATATTCATTTAATAAAATCT
65 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCT
* * * * * *
37853 CAACCGCATTGAATTTAATGATTTGTTTTTACGAGCATCTGAAATCTTGTTTCGATTTAATTAGA
130 CAGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTG-AATCTTGTTTCGATTTAATTAGA
37918 AA
194 AA
Statistics
Matches: 1530, Mismatches: 250, Indels: 120
0.81 0.13 0.06
Matches are distributed among these distances:
317 54 0.04
318 15 0.01
319 72 0.05
320 23 0.02
321 16 0.01
322 208 0.14
323 42 0.03
324 3 0.00
326 14 0.01
327 38 0.02
328 38 0.02
329 3 0.00
330 147 0.10
331 121 0.08
332 89 0.06
333 485 0.32
334 49 0.03
335 112 0.07
336 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (330 bp):
TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGGC
TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
AGCCACATTGCATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAAA
TTAATTCGGGAAAAAATTGAAAAACGATATTAGAAGCGTGAAAATCCCTCAATATTTTTGGCGTT
GAATTATATATTTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGTTTTTG
CAAAA
Found at i:37005 original size:655 final size:646
Alignment explanation
Indices: 35755--37919 Score: 2187
Period size: 655 Copynumber: 3.3 Consensus size: 646
35745 TTGGGCCAGT
* * * *
35755 TTTTAGCTGAAATCGTGTACTAACCATCATGG-TTTTGGCTAAAAACGCGTTTCGGGGCCCTGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGAC
* * * ** *
35819 TTAGTTTTGCATGATTTTTGGCGCTAAGACTCCTTGAAAT-TCCTATATTCATTTAATCAAATCT
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATAT-CTATATTCATCGAACCAAATCT
* * * * * * * * *
35883 AAACTACATTGAATTTAATGATTTATTTTTACGTGCACCCTGAATCTTGTTTCGATTTGATTAGA
130 CAACCACATTGAATATAAGGATTTGTTTTTACGAGCA-TCTGAAACTTGTTTCGATTTAATTAGA
* * * * * *
35948 AATTAATTCAGAAAAATATGAAAAACGATATTAAAAGAGTGAAAAGTCTCCAATCTTTTTTGCGT
194 AATTAATTCGGAAAAAAATGAAAAATGATATTAAAAGAGTGAAAA-CCTGCAATCTTTTTGGCGT
* * * * **
36013 TGAATTATATATATTTTATGAGTATTGTGGCTAAAAATTGTGGAAAACCTTTTCGGGTCAGTTTT
258 TGAATTATTTAT-TTTTATAAGTATTGTGGCAAAAAATTG-AGAAAAAATTTTCGGGTCAG---T
*
36078 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTTGCTAAAAACGCATTCCGG
318 T-----ATTTTAGCCGAAATCGTGTACTAACCATCAC-G--ATTTTTGCTAAAAACG-ATTCCGG
* * * *
36143 AGCCACGGCTCAATTTTGAATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAA
374 AGCC-CGACTCAATTTTGCATGGTTTTTGACACAAAGACTCCTTGAAATATCTATATTCATCGAA
* * * * *
36208 CCAAAT-TTCAGCCACAGTGCATATAAGGATTTGTTTTTTCGGGAATTTGAATCTTGTTTCCATT
438 CCAAATCTT-AGCCACATTGGATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCCATT
* * ** * *
36272 TAATTAGAAATTAATTCGGGGAAAAAAT-TGAAAAACGATATTAGAAGTTTGAAAATCCCATCAA
502 TAATTAGAAATAAAATC--GGAAAAAATATGAAAAACGATATTAGAAGCGTGAAAAACCC-TTAA
* *
36336 TATTTCTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGACGAAAAAAATTT
564 TTTTTCTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGACGAAAAAATTTT
36401 CGGGTCAGTTTTTACAAAA
629 CGGGTCAGTTTTT-CAAAA
* * * * **
36420 TTTTAGCCGAAATCGTGTACTATCCATCACGGTTTTTGACTACAAACGCGTTTTGGAGCCCCGGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGAC
*
36485 TCAATTTTGCATTATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
* * * * * *
36550 AGCCACATTGGATACAAGGATTTGTTTTTACGAGTATCTGAAACTTTTTTCGATTCAATTAGAAA
131 AACCACATTGAATATAAGGATTTGTTTTTACGAGCATCTGAAACTTGTTTCGATTTAATTAGAAA
* * *
36615 TTAATTCGGAAAAAAATGGAAAAAATGGTATTAGAAGCGTGGAAAACACTGCAATCTTTTTGGCG
196 TTAATTCGGAAAAAAAT-G-AAAAATGATATTAAAAGAGT-GAAAAC-CTGCAATCTTTTTGGCG
* *
36680 TTAAATTATTTATTTTTATAAGTATTGTGGCAAAAAATTGAGAACAAATTTTTCGGGTCAG-T-T
257 TTGAATTATTTATTTTTATAAGTATTGTGGCAAAAAATTGAGAA-AAAATTTTCGGGTCAGTTAT
*
36743 TTTAGCCGAAATCGTGTA-TAAACCATCACGATTTTTGCCTAAAAACGTATTTCGG-GACCTCGA
321 TTTAGCCGAAATCGTGTACT-AACCATCACGATTTTTG-CTAAAAACG-ATTCCGGAG-CC-CGA
* * * * * *
36806 CTCAGTTTTGCATGGTTTTTGACATAAAGACTCCTT-ATAATATCAATGTTCATCTAACCCAATC
381 CTCAATTTTGCATGGTTTTTGACACAAAGACTCCTTGA-AATATCTATATTCATCGAACCAAATC
* * * * *
36870 TTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGA
445 TTAGCCACATTGGATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCCATTTAATTAGA
* * *
36935 AAAAAAATCGGATAAAAATATGAAAAACGGTATTAGAAGCGTGAAAAACCCTTAAGTTTTTCTAG
510 AATAAAATCGGA-AAAAATATGAAAAACGATATTAGAAGCGTGAAAAACCCTTAA-TTTTTCTGG
* * *
37000 CGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGACGAAAAAATTTTCGTGTAAGT
573 CGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGACGAAAAAATTTTCGGGTCAGT
37065 TTTTGCAAAA
638 TTTT-CAAAA
* * ** * * *
37075 TTTTAGTCGAAATCGTGTACTATCCATCACGGTTTTTGGCTTCAAACGCCTTTCGGAGCCCCAAG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGAC
* *
37140 TCAATTTTGCATGATTTTTTGCGCAAAGACTCCTTGAAATATCTATAATCATCGAACCAAATCTC
66 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
* * * * * * *
37205 AGCCACATT-ACATATAAGGTTTTGTTTTTTCGGGCATCTGAATCGTGTTTCCATTTAATTAGAA
131 AACCACATTGA-ATATAAGGATTTGTTTTTACGAGCATCTGAAACTTGTTTCGATTTAATTAGAA
* * * * *
37269 ATTAATTCGGGAAAAAAATAGAAAAGTGATAATAAAAGTGTGAAAATCCAGTCAATATTTTTGGC
195 ATTAATTC-GGAAAAAAAT-GAAAAATGATATTAAAAGAGTGAAAA-CCTG-CAATCTTTTTGGC
* * *
37334 GTTGAATATATTT-TTTGT-TAAGTATTGTGGAAAAAAACTGAGGAAAAAATTTTCGGGTCAGTT
256 GTTGAAT-TATTTATTTTTATAAGTATTGTGGCAAAAAATTGA-GAAAAAATTTTCGGGTCAG--
* ** *
37397 TTTGCAAAATTTTAGTCGAAATTATGTACTAACCATCACGGTTTTTGGCTAGAAACACG-TTCCG
317 -TT-----ATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTT-GCTA-AAA-ACGATTCCG
* * *
37461 GAGCCCCAGCTCAATTTTGCAT-GATTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGA
373 GAGCCCGA-CTCAATTTTGCATGGTTTTTGACACAAAGACTCCTTGAAATATCTATATTCATCGA
* * * * * * *
37525 ACCAAATCTCAGCCACATTAGAAATAAGTATTTGTTTTTACGGGCATCTAAATCTTGATTCTATT
437 ACCAAATCTTAGCCACATTGGATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCCATT
* * * * *
37590 TAATTAGAAATTAATAT-GG-GAAAA-AGGAAAAACGATATTAGAAGCGCG-AAAAGCCTGTCAA
502 TAATTAGAAA-TAAAATCGGAAAAAATATGAAAAACGATATTAGAAGCGTGAAAAACCCT-T-AA
* * * *
37651 TTTTT-TGGCGTTGAAATATATATTATTTCTGAG-AGTTGTGGTAAAAAATTGA-GAGAAAACTT
564 TTTTTCTGGCGTTGAATTATATATTTTTTCTGAGTA-TTGTGGCAAAAAATTGACGA-AAAAATT
*
37713 TTCGGG-C-------C--AG
627 TTCGGGTCAGTTTTTCAAAA
* * * *
37723 TTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTCGCTAAAAACGCGTTTCGGGGCCCCAGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCC-GA
* * * ** * * ** **
37788 CTTAGTTTTGCATGAATTTTGGCGCCGAGACTCCTTTAAATTTCTATATTCATTTAATAAAATCT
65 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCT
* * *
37853 CAACCGCATTGAATTTAATGATTTGTTTTTACGAGCATCTGAAATCTTGTTTCGATTTAATTAGA
130 CAACCACATTGAATATAAGGATTTGTTTTTACGAGCATCTGAAA-CTTGTTTCGATTTAATTAGA
37918 AA
194 AA
Statistics
Matches: 1258, Mismatches: 196, Indels: 107
0.81 0.13 0.07
Matches are distributed among these distances:
648 55 0.04
649 85 0.07
650 22 0.02
653 3 0.00
654 60 0.05
655 455 0.36
656 20 0.02
657 28 0.02
658 4 0.00
659 58 0.05
660 27 0.02
661 6 0.00
663 102 0.08
664 58 0.05
665 74 0.06
666 114 0.09
667 56 0.04
668 31 0.02
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (646 bp):
TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCCGAC
TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTC
AACCACATTGAATATAAGGATTTGTTTTTACGAGCATCTGAAACTTGTTTCGATTTAATTAGAAA
TTAATTCGGAAAAAAATGAAAAATGATATTAAAAGAGTGAAAACCTGCAATCTTTTTGGCGTTGA
ATTATTTATTTTTATAAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAGTTATTTTAG
CCGAAATCGTGTACTAACCATCACGATTTTTGCTAAAAACGATTCCGGAGCCCGACTCAATTTTG
CATGGTTTTTGACACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTTAGCCACATT
GGATATAAGGATTTGTTTTTACGGGCATCTGAATCTTGTTTCCATTTAATTAGAAATAAAATCGG
AAAAAATATGAAAAACGATATTAGAAGCGTGAAAAACCCTTAATTTTTCTGGCGTTGAATTATAT
ATTTTTTCTGAGTATTGTGGCAAAAAATTGACGAAAAAATTTTCGGGTCAGTTTTTCAAAA
Found at i:37678 original size:988 final size:976
Alignment explanation
Indices: 35727--37919 Score: 2697
Period size: 988 Copynumber: 2.2 Consensus size: 976
35717 AGGCTCCTTG
* * * *
35727 AAAATTGAGAGAAATTTTTTGGGCCAGTTTTTAGCTGAAATCGTGTACTAACCATCATGGTTTTG
1 AAAATTGAGAAAAATTTTTCGGGCCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGTTTTTG
* * *
35792 GCTAAAAACGCGTTTCGGGGCCCTGACTTAGTTTTGCATGATTTTTGGCGCTAAGACTCCTTGA-
66 CCTAAAAACGCGTTTCGGGGCCCAGACTTAGTTTTGCATGATTTTTGGC-ATAAGACTCCTT-AT
* * *
35856 AATTCCTATATTCATTTAATCAAATCTAAACTACATTGAATTTAATGATTTATTTTTACGTGCAC
129 AATT-CTATATTCATTTAATCAAATCTAAACCACATTGAATTTAATGATTTGTTTTTACGAGCA-
* * ** *
35921 CCTGAATCTTGTTTCGATTTGATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGA
192 TCTGAATCTTGTTTCGATTTAATTAGAAAAAAAATCAGAAAAATATGAAAAACGATATTAAAAGA
* * * *
35986 GTGAAAAGTCTCCAATCTTTTTTGCGTTGAATTATATATATTTTATGAGTATTGTGGCTAAAAAT
257 GTGAAAAGACTCCAATCTTTTTAGCGTTGAATTATATATATTTTATAAGTATTGTGGCAAAAAAT
** ** *
36051 TGTGGAAAACCTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
322 TGACGAAAAAATTTTCGGGTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
* *
36116 GTTTTTTTTGCTAAAAACGCATTCCGGAGCCACGGCTCAATTTTGAATGATTTTTGGCACAAAGA
387 G-TTTTTTGGCTAAAAACGCATTCCGGAGCCACAGCTCAATTTTGAATGATTTTTGGCACAAAGA
* * *
36181 CTCCTTGAAATATCTATATTCATCGAACCAAATTTCAGCCACAGTGCATATAAGGATTTGTTTTT
451 CTCCTTGAAATATCTATAATCATCGAACCAAATCTCAGCCACAGTACATATAAGGATTTGTTTTT
* * * *
36246 TCGGGAATTTGAATCTTGTTTCCATTTAATTAGAAATTAATTCGGGGAAAAAATTGAAAAACGAT
516 TCGGGAATCTGAATCGTGTTTCCATTTAATTAGAAATTAATTCGGGAAAAAAATAGAAAAACGAT
* * * *
36311 ATTAGAAGTTTGAAAATCCCATCAATATTTCTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
581 AATAAAAGTGTGAAAATCCCATCAATATTTCTGGCGTTGAATTATATATTTTTTCTAAGTATTGT
* * *
36376 GGCAAAAAATTGACGAAAAAAATTTCGGGTCAGTTTTTACAAAATTTTAGCCGAAATCGTGTACT
646 GGAAAAAAACTGACGAAAAAAATTTCGGGTCAGTTTTTACAAAATTTTAGCCGAAATCATGTACT
* * ** * * * *
36441 ATCCATCACGGTTTTTGACTACAAACGCGTTTTGGAGCCCCGGGTCAATTTTGCATTATTTTTGG
711 AACCATCACGGTTTTTGACTACAAACACGTTCCGGAGCCCCAGCTCAATTTTGCATGATTTTTGA
* *
36506 CGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATACAAGGAT
776 CGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTAGAAACAAGGAT
* **
36571 TTGTTTTTACGAGTATCTGAAACTTTTTTCGATTCAATTAGAAATTAATTCGGAAAAAAATGGAA
841 TTGTTTTTACGAGCATCTGAAACTTGATTCGATTCAATTAGAAATTAATTCGGAAAAAAATGGAA
* * * * *
36636 AAAATGGTATTAGAAGCGTGGAAAACACTGCAATCTTTTTGGCGTTAAATTATTTATTTTTATAA
906 AAAACGATATTAGAAGCGTCGAAAACACTGCAATCTTTTTGGCGTTAAATTA--T-TTCTGA-AA
36701 GTATTGTGGCAA
967 G--TTGTGGCAA
* *
36713 AAAATTGAGAACAAATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTA-TAAACCATCACGATTT
1 AAAATTGAGAA-AAATTTTTCGGGCCAGTTTTTAGCTGAAATCGTGTACT-AACCATCACG-TTT
** * * * *
36777 TTGCCTAAAAACGTATTTCGGGACCTC-GACTCAGTTTTGCATGGTTTTTGACATAAAGACTCCT
63 TTGCCTAAAAACGCGTTTCGGGGCC-CAGACTTAGTTTTGCATGATTTTTGGCAT-AAGACTCCT
* * * * * * * * * *
36841 TATAATATCAATGTTCATCTAACCCAATCTTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAG
126 TATAAT-TCTATATTCATTTAATCAAATCTAAACCACATTGAATTTAATGATTTGTTTTTACGAG
* * * *
36906 CATCTGAATCTTGTTTCGATTAAATTAGAAAAAAAATCGGATAAAAATATGAAAAACGGTATTAG
190 CATCTGAATCTTGTTTCGATTTAATTAGAAAAAAAATC--AGAAAAATATGAAAAACGATATTAA
* * *
36971 AAGCGTGAAAA-AC-CCTTAAGT-TTTTCTAGCGTTGAATTATATATTTTTTCTAAGTATTGTGG
253 AAGAGTGAAAAGACTCC--AA-TCTTTT-TAGCGTTGAATTATATATATTTTATAAGTATTGTGG
* * *
37033 CAAAAAATTGACGAAAAAATTTTCGTGTAAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAT
314 CAAAAAATTGACGAAAAAATTTTCGGGTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAA
** * * * * *
37098 CCATCACGG-TTTTTGGCTTCAAACGCCTTTCGGAGCCCCAAG-TCAATTTTGCATGATTTTTTG
379 CCATCACGGTTTTTTGGCTAAAAACGCATTCCGGAGCCAC-AGCTCAATTTTGAATGATTTTTGG
* * *
37161 CGCAAAGACTCCTTGAAATATCTATAATCATCGAACCAAATCTCAGCCACATTACATATAAGGTT
443 CACAAAGACTCCTTGAAATATCTATAATCATCGAACCAAATCTCAGCCACAGTACATATAAGGAT
*
37226 TTGTTTTTTCGGGCATCTGAATCGTGTTTCCATTTAATTAGAAATTAATTCGGGAAAAAAATAGA
508 TTGTTTTTTCGGGAATCTGAATCGTGTTTCCATTTAATTAGAAATTAATTCGGGAAAAAAATAGA
** *
37291 AAAGTGATAATAAAAGTGTGAAAAT-CCAGTCAATATTTTTGGCGTTGAA-TATAT-TTTTTGT-
573 AAAACGATAATAAAAGTGTGAAAATCCCA-TCAATATTTCTGGCGTTGAATTATATATTTTT-TC
* * * *
37352 TAAGTATTGTGGAAAAAAACTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGTCGAA
636 TAAGTATTGTGGAAAAAAACTGACGAAAAAAATTTCGGGTCAGTTTTTACAAAATTTTAGCCGAA
* * *
37417 ATTATGTACTAACCATCACGGTTTTTGGCTAGAAACACGTTCCGGAGCCCCAGCTCAATTTTGCA
701 ATCATGTACTAACCATCACGGTTTTTGACTACAAACACGTTCCGGAGCCCCAGCTCAATTTTGCA
37482 TGA-TTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTAG
766 TGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTAG
* * * * *
37546 AAATAAGTATTTGTTTTTACGGGCATCT-AAATCTTGATTCTATTTAATTAGAAATTAATAT-GG
831 AAACAAGGATTTGTTTTTACGAGCATCTGAAA-CTTGATTCGATTCAATTAGAAATTAAT-TCGG
*
37609 -GAAAAA-GG-AAAAACGATATTAGAAGCG-CGAAAAGC-CTGTCAAT-TTTTTGGCGTTGAAAT
894 AAAAAAATGGAAAAAACGATATTAGAAGCGTCGAAAA-CACTG-CAATCTTTTTGGCG-T----T
* *
37668 ATATATTATTTCTGAGAGTTGTGGTAA
952 A-A-ATTATTTCTGAAAGTTGTGGCAA
*
37695 AAAATTGAGAGAAAACTTTTCGGGCCAG-TTTTAGCTGAAATCGTGTACTAACCATCACGGTTTT
1 AAAATTGAGA-AAAATTTTTCGGGCCAGTTTTTAGCTGAAATCGTGTACTAACCATCAC-GTTTT
* * ***
37759 T-CGCTAAAAACGCGTTTCGGGGCCCCAGGCTTAGTTTTGCATGAATTTTGGCGCCGAGACTCCT
64 TGC-CTAAAAACGCGTTTCGGGG-CCCAGACTTAGTTTTGCATGATTTTTGGC-ATAAGACTCCT
* * *
37823 T-TAAATTTCTATATTCATTTAATAAAATCTCAACCGCATTGAATTTAATGATTTGTTTTTACGA
126 TAT-AA-TTCTATATTCATTTAATCAAATCTAAACCACATTGAATTTAATGATTTGTTTTTACGA
37887 GCATCTGAAATCTTGTTTCGATTTAATTAGAAA
189 GCATCTG-AATCTTGTTTCGATTTAATTAGAAA
Statistics
Matches: 1029, Mismatches: 141, Indels: 77
0.83 0.11 0.06
Matches are distributed among these distances:
980 1 0.00
981 67 0.07
982 142 0.14
983 28 0.03
984 10 0.01
985 111 0.11
986 135 0.13
987 86 0.08
988 310 0.30
989 41 0.04
990 98 0.10
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (976 bp):
AAAATTGAGAAAAATTTTTCGGGCCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGTTTTTG
CCTAAAAACGCGTTTCGGGGCCCAGACTTAGTTTTGCATGATTTTTGGCATAAGACTCCTTATAA
TTCTATATTCATTTAATCAAATCTAAACCACATTGAATTTAATGATTTGTTTTTACGAGCATCTG
AATCTTGTTTCGATTTAATTAGAAAAAAAATCAGAAAAATATGAAAAACGATATTAAAAGAGTGA
AAAGACTCCAATCTTTTTAGCGTTGAATTATATATATTTTATAAGTATTGTGGCAAAAAATTGAC
GAAAAAATTTTCGGGTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
TTTGGCTAAAAACGCATTCCGGAGCCACAGCTCAATTTTGAATGATTTTTGGCACAAAGACTCCT
TGAAATATCTATAATCATCGAACCAAATCTCAGCCACAGTACATATAAGGATTTGTTTTTTCGGG
AATCTGAATCGTGTTTCCATTTAATTAGAAATTAATTCGGGAAAAAAATAGAAAAACGATAATAA
AAGTGTGAAAATCCCATCAATATTTCTGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGAAA
AAAACTGACGAAAAAAATTTCGGGTCAGTTTTTACAAAATTTTAGCCGAAATCATGTACTAACCA
TCACGGTTTTTGACTACAAACACGTTCCGGAGCCCCAGCTCAATTTTGCATGATTTTTGACGCAA
AGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTAGAAACAAGGATTTGTT
TTTACGAGCATCTGAAACTTGATTCGATTCAATTAGAAATTAATTCGGAAAAAAATGGAAAAAAC
GATATTAGAAGCGTCGAAAACACTGCAATCTTTTTGGCGTTAAATTATTTCTGAAAGTTGTGGCA
A
Done.