Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010918.1 Corchorus olitorius cultivar O-4 contig10950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59012

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
426--2936
332
7.7
326
78
9
2275
32
15
17
34
1.91
434--2928
654
3.8
643
78
9
2298
32
15
17
34
1.91
3422--5386
332
6.1
323
77
10
1553
32
14
17
35
1.90
4875--5612
305
2.4
307
80
6
803
32
13
16
37
1.88
7890--7936
24
2.0
24
87
4
69
27
19
14
38
1.91
11419--11488
26
2.7
26
100
0
140
37
28
5
28
1.80
25691--25750
15
3.7
15
75
16
66
35
3
10
51
1.52
25690--25756
34
2.0
34
100
0
134
35
2
11
49
1.55
25706--25775
19
3.9
18
76
14
65
38
2
12
45
1.57
25694--25769
34
2.2
34
92
0
125
36
3
11
47
1.59
25743--25780
19
2.0
19
100
0
76
42
5
15
36
1.70
26554--26708
81
1.9
80
94
3
276
37
23
11
27
1.89
28424--28462
19
2.1
19
100
0
78
33
30
15
20
1.94
36508--36548
21
2.0
21
95
0
73
39
17
19
24
1.92
38353--38378
13
2.0
13
100
0
52
46
0
30
23
1.53
48375--48440
3
22.7
3
72
17
50
63
3
3
30
1.24
55719--55751
17
1.9
17
93
0
57
18
18
0
63
1.31
58235--58268
14
2.4
14
95
0
59
29
14
23
32
1.94
58554--58599
23
2.0
22
87
4
65
26
4
8
60
1.44

Tables:   1

The End!