Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010922.1 Corchorus olitorius cultivar O-4 contig10954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76084

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58--88
2
15.5
2
100
0
62
51
0
0
48
1.00
1409--1476
30
2.3
29
87
5
91
44
0
11
44
1.40
5949--5981
16
2.1
16
88
5
50
75
0
18
6
1.00
7560--7684
63
2.0
63
96
0
232
47
26
9
16
1.78
20389--20413
13
1.9
13
100
0
50
32
16
12
40
1.84
25182--25220
2
20.0
2
94
5
71
48
0
0
51
1.00
30854--30901
20
2.3
21
89
3
80
37
25
8
29
1.85
31444--31502
19
3.0
20
82
7
75
28
16
11
42
1.84
37573--37624
19
2.8
19
75
11
54
34
0
9
55
1.32
60732--60802
29
2.4
29
81
4
81
21
8
7
63
1.46
60732--60801
28
2.4
30
83
6
83
21
8
7
62
1.47
62194--62240
25
2.0
24
84
16
62
42
10
8
38
1.70
72426--72452
6
4.5
6
100
0
54
0
33
0
66
0.92

Tables:   1

The End!