Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010927.1 Corchorus olitorius cultivar O-4 contig10959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3646
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29


Found at i:37 original size:25 final size:25

Alignment explanation


    Indices: 3--52  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

          1 CT

                                     
          3 TTCACATTAACAAACAGGATTTAAC
          1 TTCACATTAACAAACAGGATTTAAC

                                     
         28 TTCACATTAACAAACAGGATTTAAC
          1 TTCACATTAACAAACAGGATTTAAC

         53 ACTTATCTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28


Consensus pattern (25 bp):   
TTCACATTAACAAACAGGATTTAAC

Found at i:1466 original size:17 final size:17

Alignment explanation


    Indices: 1440--1473  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1430 TGAGGAGACC

                             
       1440 TTTAGCACGAGATAAGA
          1 TTTAGCACGAGATAAGA

                 *           
       1457 TTTAGTACGAGATAAGA
          1 TTTAGCACGAGATAAGA

       1474 CTAGATTAGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26


Consensus pattern (17 bp):   
TTTAGCACGAGATAAGA
Done.