Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001093.1 Corchorus olitorius cultivar O-4 contig01093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4248
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:512 original size:11 final size:11

Alignment explanation


    Indices: 498--528  Score: 62
    Period size: 11  Copynumber: 2.8  Consensus size: 11

        488 AAAAACAAAG

                       
        498 AAAATACATAT
          1 AAAATACATAT

                       
        509 AAAATACATAT
          1 AAAATACATAT

                     
        520 AAAATACAT
          1 AAAATACAT

        529 GGTGGAAATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.65, C:0.10, G:0.00, T:0.26


Consensus pattern (11 bp):   
AAAATACATAT
Done.