Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010935.1 Corchorus olitorius cultivar O-4 contig10967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18828

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--219
18
2.1
18
89
0
56
45
10
0
43
1.39
1656--1685
5
6.2
5
92
7
53
83
0
16
0
0.65
1655--1683
14
2.1
14
100
0
58
86
0
13
0
0.58
5541--5604
33
2.0
32
82
8
78
9
18
4
67
1.37
7820--7913
45
2.2
43
81
7
111
38
22
5
34
1.77
10137--10189
22
2.4
22
87
3
70
11
54
0
33
1.36
11268--11298
2
15.5
2
100
0
62
51
0
0
48
1.00
11365--11522
74
2.1
74
98
0
307
27
34
4
33
1.77
11987--12083
48
2.0
48
100
0
194
28
12
19
39
1.88
12581--12605
13
1.9
13
100
0
50
32
16
12
40
1.84
12826--13079
133
1.9
130
87
2
364
27
14
23
34
1.94
13585--13610
13
2.0
13
100
0
52
38
15
7
38
1.76
16913--16970
11
5.1
12
73
22
54
74
0
22
3
0.97
17362--17390
15
1.9
15
100
0
58
44
13
13
27
1.82

Tables:   1

The End!