Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001094.1 Corchorus olitorius cultivar O-4 contig01094, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37


Found at i:499 original size:20 final size:20

Alignment explanation


    Indices: 474--514  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        464 CTTGTGTCTT

                                
        474 GTTTTTATTTTAAGTCAATA
          1 GTTTTTATTTTAAGTCAATA

                                
        494 GTTTTTATTTTAAGTCAATA
          1 GTTTTTATTTTAAGTCAATA

             
        514 G
          1 G

        515 GATGACGCCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54


Consensus pattern (20 bp):   
GTTTTTATTTTAAGTCAATA
Done.