Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010962.1 Corchorus olitorius cultivar O-4 contig10994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24


Found at i:281 original size:154 final size:154

Alignment explanation


    Indices: 1--991  Score: 1420
    Period size: 154  Copynumber: 6.4  Consensus size: 154

                                                           *                 
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTTGACTAATCTCACCAAAA
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA

                                     *        *   *    *                     
         66 TGATTATAGTTAGGCCATAAACAATCGAAAGAAAGGCACTGAGTGTTGCCAAATCGAAGACGATT
         66 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT

                    *            *  
        131 CAAAACGTCACTAATGGGCCCCGA
        131 CAAAACGTAACTAATGGGCCCAGA

                                                                             
        155 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA

                   *   *                *               *     *     *        
        220 TGATTATCGTTTGGCCATAAACAATGGATAGAAAAGCATTGAGGTTTGCCTAATCGTAGACGATT
         66 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT

                   *                
        285 CAAAACGGAACTAATGGGCCCAGA
        131 CAAAACGTAACTAATGGGCCCAGA

                                   **                      *                 
        309 TAGGCCCAAAATAA-AATGTGTTCCAAATGAGCTAAAAAACTTCACACTGGACTAATCTCACCAA
          1 TAGGCCCAAAATAACAA-GTGTTGAAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACCAA

                                                                             
        373 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG-GTGGTTGCCAAATCGAAGACG
         64 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAG-GGTTGCCAAATCGAAGACG

                                        
        437 ATTCAAAACAG-AACTAATGGGCCCAGA
        128 ATTCAAAAC-GTAACTAATGGGCCCAGA

                                  **                                         
        464 TAGGCCCAAAATAACAAGTGTTCCAAATGAGC-AAAAACTTCACAGTGGACTAATCTCACCAAAA
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA

                              *               *     *       *                
        528 TGATTATAGTTAGGCCATGAACAATGGAAAGAAAGGCATTTAGGGTTGTCAAATCGAAGACGATT
         66 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT

            *       *        **      
        593 AAAAACGTCACTAATGTACCCCA-A
        131 CAAAACGTAACTAATG-GGCCCAGA

             *                                  *                            
        617 TTGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAACACTTCACAGTGGACTAATCTCACCAAAA
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA

                              *               *      *       *               
        682 TGATTATAGTTAGGCCATGAACAATGGAAAGAAAGGCATTTAAGGGTTGTCAAATCGAAGACGAT
         66 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCA-TTGAGGGTTGCCAAATCGAAGACGAT

             *       *        **      
        747 TAAAAACGTCACTAATGTACCCCA-A
        130 TCAAAACGTAACTAATG-GGCCCAGA

             *                                  *                            
        772 TTGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAACACTTCACAGTGGACTAATCTCACCAAAA
          1 TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA

                   *   *                *               *     *     *        
        837 TGATTATCGTTTGGCCATAAACAATGGATAGAAAAGCATTGAGGTTTGCCTAATCGTAGACGATT
         66 TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT

                   *                
        902 CAAAACGGAACTAATGGGCCCAGA
        131 CAAAACGTAACTAATGGGCCCAGA

                                   **                     *                  
        926 TAGGCCCAAAATAA-AATGTGTTCCAAATGAGCTAAAAACTTCACACTGGACTAATCTCACCAAA
          1 TAGGCCCAAAATAACAA-GTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA

              
        990 AT
         65 AT

        992 TGATACGAAT


Statistics
Matches: 768,  Mismatches: 57, Indels: 24
        0.90            0.07        0.03

Matches are distributed among these distances:
 152    1  0.00
 153  140  0.18
 154  337  0.44
 155  287  0.37
 156    3  0.00

ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22


Consensus pattern (154 bp):   
TAGGCCCAAAATAACAAGTGTTGAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAA
TGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATT
CAAAACGTAACTAATGGGCCCAGA

Done.