Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010970.1 Corchorus olitorius cultivar O-4 contig11002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1246
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Found at i:286 original size:154 final size:154

Alignment explanation


    Indices: 5--1246  Score: 1886
    Period size: 154  Copynumber: 8.1  Consensus size: 154

          1 TCAT

                                         ***        *           *            
          5 CAAAATGATTATAGTTAGGCCATAAACAACATAAAGAAAAACTTTGAGGTTTACCAAATCGAAGA
          1 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA

                                    *    *     *                     *       
         70 CGATTCAAAACGGAACTAATGGGCACCGACAGGCCAAAAATAACAAGTGTTCCAAATAAGCTAAA
         66 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA

                                    
        135 AACTTCACAGTGGACTAATCTCAC
        131 AACTTCACAGTGGACTAATCTCAC

                              *                       *             *        
        159 CAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAGATCGAAGA
          1 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA

                      * **                                                   
        224 CGATTCAAAATGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
         66 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA

                                   *
        289 AACTTCACAGTGGACTAATCTCAT
        131 AACTTCACAGTGGACTAATCTCAC

                                            *                            *   
        313 CAAAATGATTATAGTTAGGCCATAAACAACT-TAGAA-AAAAGCTTTGAGGTTTGCCAAATAGAA
          1 CAAAATGATTATAGTTAGGCCATAAACAA-TGGA-AAGAAAAGCTTTGAGGTTTGCCAAATCGAA

                                  *                                          
        376 GACGATTCAAAACGGAACTAATAGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
         64 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA

                                  *   
        441 AAAACTTCACAGTGGACTAATCGCAC
        129 AAAACTTCACAGTGGACTAATCTCAC

                *                                     *                      
        467 CAAATTGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGA
          1 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA

                        **           *    *                                  
        532 CGATTCAAAACGTCACTAATGGGCCGCGATTGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
         66 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA

                                   *
        597 AACTTCACAGTGGACTAATCTCAT
        131 AACTTCACAGTGGACTAATCTCAC

                                            *                                
        621 CAAAATGATTATAGTTAGGCCATAAACAACT-TAGAA-AAAAGCTTTGAGGTTTGCCAAATCGAA
          1 CAAAATGATTATAGTTAGGCCATAAACAA-TGGA-AAGAAAAGCTTTGAGGTTTGCCAAATCGAA

                          **                                                 
        684 GACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
         64 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA

                                      
        749 AAAACTTCACAGTGGACTAATCTCAC
        129 AAAACTTCACAGTGGACTAATCTCAC

                              *       *                *                   * 
        775 CAAAATGATTATAGTTAGTCCATAAAAAATGGAAAGAAAAGCTCTGAGGTTTGCCAAATCGAACA
          1 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA

                                           *                                *
        840 CGATTCAAAACGGAACTAATGGGCCCCGATAAGCCCAAAATAACAAGTGTTCCAAATGAGCTAAG
         66 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA

                   *       *       *
        905 AACTTCATAGTGGACCAATCTCAT
        131 AACTTCACAGTGGACTAATCTCAC

                                            *                                
        929 CAAAATGATTATAGTTAGGCCATAAACAACT-TAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAG
          1 CAAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAG

                        * **             *                     *             
        993 ACGATT-AGAAATGTCACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGATCCAAATGAGCTA
         65 ACGATTCA-AAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA

                                      
       1057 AAAACTTCACAGTGGACTAATCTCAC
        129 AAAACTTCACAGTGGACTAATCTCAC

            *                 *       *                * *                   
       1083 TAAAATGATTATAGTTAGTCCATAAAAAATGGAAAGAAAAGCTCTAAGGTTTGCCAAATCGAAGA
          1 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA

                      *                                     *                
       1148 CGATTCAAAAGGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTTTTCCAAATGAGCTAAG
         66 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA-

                    *               *
       1213 AAA-TTCATAGTGGACTAATCTCAT
        130 AAACTTCACAGTGGACTAATCTCAC

                      
       1237 CAAAATGATT
          1 CAAAATGATT


Statistics
Matches: 989,  Mismatches: 86, Indels: 26
        0.90            0.08        0.02

Matches are distributed among these distances:
 153    8  0.01
 154  970  0.98
 155   11  0.01

ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Consensus pattern (154 bp):   
CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA
CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
AACTTCACAGTGGACTAATCTCAC

Done.