Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010971.1 Corchorus olitorius cultivar O-4 contig11003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4366
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23


Found at i:3152 original size:9 final size:9

Alignment explanation


    Indices: 3138--3176  Score: 78
    Period size: 9  Copynumber: 4.3  Consensus size: 9

       3128 AAAATCCGCT

                     
       3138 CCGCTGAAA
          1 CCGCTGAAA

                     
       3147 CCGCTGAAA
          1 CCGCTGAAA

                     
       3156 CCGCTGAAA
          1 CCGCTGAAA

                     
       3165 CCGCTGAAA
          1 CCGCTGAAA

               
       3174 CCG
          1 CCG

       3177 TCTTGCCGGA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   30  1.00

ACGTcount: A:0.31, C:0.36, G:0.23, T:0.10


Consensus pattern (9 bp):   
CCGCTGAAA

Done.