Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010975.1 Corchorus olitorius cultivar O-4 contig11007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2042
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Found at i:73 original size:48 final size:48
Alignment explanation
Indices: 1--2042 Score: 2544
Period size: 48 Copynumber: 43.1 Consensus size: 48
* * * * *
1 TTCCGACTGGGAAGGGCAACACAGGAATAAAATGTCGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
49 TTCCGACCGGGAAGGGCGAAACAGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
97 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAAAACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * ** *
145 TTCGGACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
193 TTCCGACCAGGAAGGGCATAACGGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * ** * *
241 TTCGGACTGGGAAGGGCAAAATTGTAATAAAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
289 TTCCGACCAGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
337 TTTCGACCGGGAAGGGCAAAACGGGAATAAAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
385 TTCCGACCGGGAAGGGCAAAACGAGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
433 TTCCGACCGGGAAGGGCAAAATGGGAATACAATGTTGAATACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
481 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
529 TTCCGACCGGGAAGGGCAAAACTGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * ****
577 TTCGGACTGGGAAGGGCAAAATTATAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* **
625 TTCCGACCGGGAAGGGCAAAACGGGAATAGAATGTTGAAAAGGGA-A--
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-CAACACC
** ** * ** **
671 ----GGGC-AAAACGGG-AATAC---AAT--GTTG-AAAACAAC---ACC
1 TTCCGACCGGGAA-GGGCAAAACGGGAATACAATGTTGAA-AACAACACC
* *
706 TTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAAAACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* ** *
754 TT--GAACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACCAACACC
1 TTCCG-ACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-CAACACC
*
802 TTCCGACCGGGAAGGGCAAAACGAGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
** *
850 TTCCGACCGGGAAGGGCAAAACAAGAATAAAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
** *
898 TTCCGACCGGGAAGGGCAAAACAAGAATAAAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
946 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAAAACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* ** * *
994 TT-CGAACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACCACACC
1 TTCCG-ACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* ** *
1042 TTCCGACCGGGAAGGGCAAAACGGGAATAAAATGTTGAAAAGGGA-A-G
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-CAACACC
** ** * * * * * *
1089 GGCAAAACAGGAA---TAAAA--TG-TTGA-AA-----ACAAC---ACC
1 TTCCGACCGGGAAGGGCAAAACGGGAAT-ACAATGTTGAAAACAACACC
* *
1123 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAAAAAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTG-AAAACAACACC
* *
1172 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAACCACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
1220 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAAAACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * ** *
1268 TTCGGACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACCAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-CAACACC
*
1317 TTCCGACCGGGAAGGGCAAAACGTGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
1365 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
1413 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAAAAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
1461 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * *
1509 TTCCGACAGGGAAGGGCAAAACAGGAACACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
1557 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAAAACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * ** *
1605 TTCGGACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
1653 TTTCGACCGGGAAGGGCAAAACGGGAATAGAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* *
1701 TTCAGATCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * **
1749 TTCCGACTGGGAAGGGTAAAATTGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
* * *
1797 TTCCGACTGGGAAGGG-AAAA-GAGGAATAAAATGTTGAAAACAACACT
1 TTCCGACCGGGAAGGGCAAAACG-GGAATACAATGTTGAAAACAACACC
* * *
1844 TTCCGATCGGGAAGGGCAAAACGGGAATGCAATGTTGAAAACAACACT
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*
1892 TTCCGATCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
*** ** *
1940 TTCCGACTAAGAAGGGCGAAAATTGGAATACAATGTTGAAAACAATACC
1 TTCCGACCGGGAAGGGC-AAAACGGGAATACAATGTTGAAAACAACACC
* * *
1989 TTCCGACTGGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACC
1 TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
2037 TTCCGA
1 TTCCGA
Statistics
Matches: 1738, Mismatches: 206, Indels: 100
0.85 0.10 0.05
Matches are distributed among these distances:
33 2 0.00
34 7 0.00
35 2 0.00
36 7 0.00
37 4 0.00
38 3 0.00
39 6 0.00
40 9 0.01
41 9 0.01
42 7 0.00
43 3 0.00
44 4 0.00
45 5 0.00
46 6 0.00
47 82 0.05
48 1421 0.82
49 160 0.09
50 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Consensus pattern (48 bp):
TTCCGACCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACC
Found at i:275 original size:144 final size:144
Alignment explanation
Indices: 1--2042 Score: 2819
Period size: 144 Copynumber: 14.4 Consensus size: 144
* * *
1 TTCCGACTGGGAAGGGCAACACAGGAATAAAATGTCGAAAACAACACCTTCCGACCGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
* *
66 GAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
*
131 TTGAAAACAAAACC
131 TTGAAAACAACACC
* ** * *
145 TTCGGACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACAACACCTTCCGACCAGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
* * * ** * *
210 ATAACGGGAATACAATGTTGAAAACAACACCTTCGGACTGGGAAGGGCAAAATTGTAATAAAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
275 TTGAAAACAACACC
131 TTGAAAACAACACC
** * *
289 TTCCGACCAGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACCTTTCGACCGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
* *
354 AAAACGGGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGAGAATACAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
419 TTGAAAACAACACC
131 TTGAAAACAACACC
* ** *
433 TTCCGACCGGGAAGGGCAAAATGGGAATACAATGTTGAATACAACACCTTCCGACCGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
*
498 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACTGGAATACAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
563 TTGAAAACAACACC
131 TTGAAAACAACACC
* * *
577 TTCGGACTGGGAAGGGCAAAATTA-TAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGG
1 TTCCGACTGGGAAGGGCAAAA-CAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGG
*
641 CAAAACGGGAATAGAATGTTG-----AA-A-------A--GGGAAGGGCAAAACGGGAATACAAT
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAAT
691 GTTGAAAACAACACC
130 GTTGAAAACAACACC
* * * *
706 TTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAAAACCTT--GAACTGGGAAGGG
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCG-ACCGGGAAGGG
** * *
769 CAAAATTGTAATACAATGTTGAAAACCAACACCTTCCGACCGGGAAGGGCAAAACGAGAATACAA
65 CAAAACGGGAATACAATGTTGAAAA-CAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAA
834 TGTTGAAAACAACACC
129 TGTTGAAAACAACACC
* * *
850 TTCCGACCGGGAAGGGCAAAACAAGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
** *
915 AAAACAAGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
*
980 TTGAAAACAAAACC
131 TTGAAAACAACACC
** * *
994 TT-CGAACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACCACACCTTCCGACCGGGAAGGG
1 TTCCG-ACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGG
* * *
1058 CAAAACGGGAATAAAATGTTG-----AA-A-------A--GGGAAGGGCAAAACAGGAATAAAAT
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAAT
1108 GTTGAAAACAACACC
130 GTTGAAAACAACACC
* *
1123 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAAAAAACACCTTCCGACCGGGAAGGG
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTG-AAAACAACACCTTCCGACCGGGAAGGG
* *
1188 CAAAACAGGAATACAATGTTGAAAACCACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAAT
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAAT
*
1253 GTTGAAAACAAAACC
130 GTTGAAAACAACACC
* ** *
1268 TTCGGACTGGGAAGGGCAAAATTGTAATACAATGTTGAAAACCAACACCTTCCGACCGGGAAGGG
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAA-CAACACCTTCCGACCGGGAAGGG
* *
1333 CAAAACGTGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACAGGAATACAAT
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAAT
1398 GTTGAAAACAACACC
130 GTTGAAAACAACACC
* *
1413 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAAAAACACCTTCCGACCGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
* * * *
1478 AAAACAGGAATACAATGTTGAAAACAACACCTTCCGACAGGGAAGGGCAAAACAGGAACACAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
1543 TTGAAAACAACACC
131 TTGAAAACAACACC
* * * *
1557 TTCCGACCGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAAAACCTTCGGACTGGGAAGGGC
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
** * * *
1622 AAAATTGTAATACAATGTTGAAAACAACACCTTTCGACCGGGAAGGGCAAAACGGGAATAGAATG
66 AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
1687 TTGAAAACAACACC
131 TTGAAAACAACACC
* * *
1701 TTCAGA-TCGGGAAGGGCAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACTGGGAAGGG
1 TTCCGACT-GGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGG
* ** * *
1765 TAAAATTGGAATACAATGTTGAAAACAACACCTTCCGACTGGGAAGGG-AAAA-GAGGAATAAAA
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACG-GGAATACAA
*
1828 TGTTGAAAACAACACT
129 TGTTGAAAACAACACC
* * * *
1844 TTCCGA-TCGGGAAGGGCAAAACGGGAATGCAATGTTGAAAACAACACTTTCCGATCGGGAAGGG
1 TTCCGACT-GGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGG
*** **
1908 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACTAAGAAGGGCGAAAATTGGAATACAA
65 CAAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC-AAAACGGGAATACAA
*
1973 TGTTGAAAACAATACC
129 TGTTGAAAACAACACC
*
1989 TTCCGACTGGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACCTTCCGA
1 TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGA
Statistics
Matches: 1692, Mismatches: 160, Indels: 91
0.87 0.08 0.05
Matches are distributed among these distances:
127 1 0.00
128 27 0.02
129 149 0.09
130 46 0.03
131 2 0.00
134 2 0.00
135 2 0.00
136 1 0.00
138 2 0.00
139 4 0.00
142 2 0.00
143 132 0.08
144 1013 0.60
145 307 0.18
146 2 0.00
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Consensus pattern (144 bp):
TTCCGACTGGGAAGGGCAAAACAGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGC
AAAACGGGAATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATACAATG
TTGAAAACAACACC
Found at i:675 original size:33 final size:33
Alignment explanation
Indices: 633--698 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
623 CCTTCCGACC
*
633 GGGAAGGGCAAAACGGGAATAGAATGTTGAAAA
1 GGGAAGGGCAAAACGGGAATACAATGTTGAAAA
666 GGGAAGGGCAAAACGGGAATACAATGTTGAAAA
1 GGGAAGGGCAAAACGGGAATACAATGTTGAAAA
699 CAACACCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.45, C:0.08, G:0.35, T:0.12
Consensus pattern (33 bp):
GGGAAGGGCAAAACGGGAATACAATGTTGAAAA
Found at i:765 original size:81 final size:80
Alignment explanation
Indices: 602--753 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 80
592 GCAAAATTAT
* *
602 AATACAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACGGGAATAGAATGTTGAAAAG
1 AATACAATGTTGAAAACAACACCTTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-
* ***
667 GGAAGGGCAAAACGGG
65 GCAAAACCAAAACGGG
683 AATACAATGTTGAAAACAACACCTTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAA-
1 AATACAATGTTGAAAACAACACCTTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAAG
747 CAAAACC
66 CAAAACC
754 TTGAACTGGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 3 0.05
81 62 0.95
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (80 bp):
AATACAATGTTGAAAACAACACCTTCCGACAGGGAAGGGCAAAACGGGAATACAATGTTGAAAAG
CAAAACCAAAACGGG
Found at i:1092 original size:33 final size:33
Alignment explanation
Indices: 1050--1115 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
1040 CCTTCCGACC
*
1050 GGGAAGGGCAAAACGGGAATAAAATGTTGAAAA
1 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAA
1083 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAA
1 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAA
1116 CAACACCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.50, C:0.06, G:0.32, T:0.12
Consensus pattern (33 bp):
GGGAAGGGCAAAACAGGAATAAAATGTTGAAAA
Found at i:1109 original size:81 final size:81
Alignment explanation
Indices: 1002--1163 Score: 261
Period size: 81 Copynumber: 2.0 Consensus size: 81
992 CCTTCGAACT
** * * * *
1002 GGGAAGGGCAAAATTGTAATACAATGTTGAAAACCACACCTTCCGACCGGGAAGGGCAAAACGGG
1 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACAGG
1067 AATAAAATGTTGAAAA
66 AATAAAATGTTGAAAA
1083 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACAGG
1 GGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACAGG
*
1148 AATACAATGTTGAAAA
66 AATAAAATGTTGAAAA
1164 AAAACACCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.44, C:0.16, G:0.26, T:0.14
Consensus pattern (81 bp):
GGGAAGGGCAAAACAGGAATAAAATGTTGAAAACAACACCTTCCGACCGGGAAGGGCAAAACAGG
AATAAAATGTTGAAAA
Done.