Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010987.1 Corchorus olitorius cultivar O-4 contig11019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928
Length: 1548
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Found at i:288 original size:154 final size:154
Alignment explanation
Indices: 4--1538 Score: 2151
Period size: 154 Copynumber: 10.0 Consensus size: 154
1 AAT
** ** * * * *
4 GACGATTCAAAACGTCACTAATGGGCCTTGATAGACCCAAAATAACCAAGAGTTCCAAATGAGCC
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAA-CAAGTGTTCCAAATGAGCT
* ** *
69 AATAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
65 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * *
134 AAGCATCAAGGGTTGCCAAGTCAAA
130 AAGCATCGAGGGTTGCCAAATCGAA
* ** ** * * *
159 GATGATTCAAAACGTCACTAATGGGCCTTGATAGACCCAAAATAACAAGTGTTCCAAATGAGCCA
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
* ** * *
224 AAAACTTCATAGTGTTCAAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
66 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
* ** *
289 AGCATTGAGATTTCCCAAATCGAA
131 AGCATCGAGGGTTGCCAAATCGAA
* * *
313 GACGATTCAGAAA-GACACTAATGGGTCCCGATAGGCCCAAAAT-ACAAGTGTT-CAAATGAGCT
1 GACGATTCA-AAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCT
** *
375 AAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCAT-AACAATGG-AAG-A
65 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
*
437 AAGCATC-AAGGTTGCCAAATCGAA
130 AAGCATCGAGGGTTGCCAAATCGAA
* * * *
461 GACGATTC-AAACGGAACTAATGGGCCCTGGA-AGGCATAAAATAACAAGTGTTCCAAAGGAGCT
1 GACGATTCAAAACGAAACTAATGGGCCC-CGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCT
*
524 AAAAAACTTCACAGTGGACTAATCTCACCAAAAATGATTATAGTTAGGCCATAAACAATCGAAAG
65 -AAAAACTTCACAGTGGACTAATCTCACC-AAAATGATTATAGTTAGGCCATAAACAATGGAAAG
* * *
589 AAAAGCATTGAGGTTTACCAAATCGAA
128 AAAAGCATCGAGGGTTGCCAAATCGAA
* *
616 GACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
*
681 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAA
66 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
*
746 AGCATCGAGGGTTGCCAAATCGAT
131 AGCATCGAGGGTTGCCAAATCGAA
* *
770 GACGATTCAAATCGAAACTAATGGCCCCCGGA-AGGCCTAAAATAACAAGTGTTCCAAATGAGCT
1 GACGATTCAAAACGAAACTAATGGGCCCC-GATAGGCCTAAAATAACAAGTGTTCCAAATGAGCT
* *
834 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAGAATCG-AAGAA
65 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * *
898 AAACATTGAGGTTTCCCAAATCGAA
130 AAGCATCGAGGGTTGCCAAATCGAA
923 GACGATTCAAAACGAAACTAATGGGCCCCGGA-AGGCCTAAAATAACAAGTGTTCCAAATGAGCT
1 GACGATTCAAAACGAAACTAATGGGCCCC-GATAGGCCTAAAATAACAAGTGTTCCAAATGAGCT
* *
987 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTACAGTTAGGCCATAAACAATGGAAAGAA
65 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
*
1052 AAGCATCAAGGGTTGCCAAATCGAA
130 AAGCATCGAGGGTTGCCAAATCGAA
* *
1077 GACGATTCAAAACGGAACTAATGGGCCCCGAGAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
*
1142 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATCGAAAGAAA
66 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
* *
1207 AGCATTGAGGTTTGCCAAATCGAA
131 AGCATCGAGGGTTGCCAAATCGAA
** * * * *
1231 GACGATTCAAAACGTCACTGATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCGAATGAGTTA
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
* * *
1296 AAAACTTCACAGTGGACTAATCTTAGCAAAAATGATTATAGTTAGCCCATAAACAATGGAAAGAA
66 AAAACTTCACAGTGGACTAATCTCA-CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* *
1361 AAGCATCGA-GGTTCCCAAATCGAT
130 AAGCATCGAGGGTTGCCAAATCGAA
*
1385 GACGATTCAAAACGAAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAAATGAGCT
1 GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCC-AAATGAGCT
* *
1450 AAAAACTTCCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACA
65 AAAAACTT-CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGA
1515 AAAGCATCGAGGGTTGCCCAAATC
129 AAAGCATCGAGGGTTG-CCAAATC
1539 CCGAATACGA
Statistics
Matches: 1252, Mismatches: 107, Indels: 40
0.89 0.08 0.03
Matches are distributed among these distances:
146 3 0.00
147 21 0.02
148 32 0.03
149 16 0.01
150 29 0.02
151 29 0.02
152 64 0.05
153 155 0.12
154 622 0.50
155 204 0.16
156 70 0.06
157 7 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (154 bp):
GACGATTCAAAACGAAACTAATGGGCCCCGATAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
AGCATCGAGGGTTGCCAAATCGAA
Found at i:960 original size:307 final size:308
Alignment explanation
Indices: 4--1538 Score: 2270
Period size: 307 Copynumber: 5.0 Consensus size: 308
1 AAT
* ** * * *
4 GACGATTCAAAACGTCACTAATGGGCCTTGATAGACCCAAAATAACCAAGAGTTCCAAATGAGCC
1 GACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAA-CAAGTGTTCCAAATGAGCT
* * *
69 AATAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
65 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * ** ** * *
134 AAGCATCAAGGGTTGCCAAGTCAAAGATGATTCAAAACGTCACTAATGGG-CCTTGATAGACCCA
130 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGA-AGGCCTA
* * ** * *
198 AAATAACAAGTGTTCCAAATGAGCCAAAAACTTCATAGTGTTCAAATCTCACCGAAATGATTATA
194 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
* *
263 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGATTTCCCAAATCGAA
259 GTTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTCCCAAATCGAA
*
313 GACGATTCAGAAA-GACACTAATGGGTCCCGATAGGCCCAAAAT-ACAAGTGTT-CAAATGAGCT
1 GACGATTCA-AAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT
* *
375 AAAAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCAT-AACAATGG-AAG-A
65 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * *
437 AAGCATCAA-GGTTGCCAAATCGAAGACGATTC-AAACGGAACTAATGGGCCCTGGAAGGCATAA
130 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAA
*
500 AATAACAAGTGTTCCAAAGGAGCTAAAAAACTTCACAGTGGACTAATCTCACCAAAAATGATTAT
195 AATAACAAGTGTTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACC-AAAATGATTAT
*
565 AGTTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTACCAAATCGAA
258 AGTTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTCCCAAATCGAA
* *
616 GACGATTCAAAACGGA-ACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCT
1 GACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT
* *
680 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAACAA
65 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * *
745 AAGCATCGAGGGTTGCCAAATCGATGACGATTCAAATCGAAACTAATGGCCCCCGGAAGGCCTAA
130 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAA
810 AATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAG
195 AATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAG
* *
875 TTAGGCCATAAAGAATCG-AAGAAAAACATTGAGGTTTCCCAAATCGAA
260 TTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTCCCAAATCGAA
* *
923 GACGATTCAAAACGAAACTAATGGGCCCCGGA-AGGCCTAAAATAACAAGTGTTCCAAATGAGCT
1 GACGATTCAAAACGACACTAATGGGCCCC-GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT
*
987 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTACAGTTAGGCCATAAACAATGGAAAGAA
65 AAAAACTTCACAGTGGTCTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
*
1052 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCC-GAGAGGCCTA
130 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGA-AGGCCTA
1116 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
194 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
*
1181 GTTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA
259 GTTAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTCCCAAATCGAA
* * * *
1231 GACGATTCAAAACGTCACTGATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCGAATGAGTTA
1 GACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
* * * *
1296 AAAACTTCACAGTGGACTAATCTTAGCAAAAATGATTATAGTTAGCCCATAAACAATGGAAAGAA
66 AAAACTTCACAGTGGTCTAATCTCA-CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
* * * *
1361 AAGCATCGA-GGTTCCCAAATCGATGACGATTCAAAACGAAACTAATGGGCCCCGAAAGGCCTAA
130 AAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAA
*
1425 AATAACAAGTGTTCCAAAATGAGCTAAAAACTTCCACAGTGGACTAATCTCACCAAAATTATTAT
195 AATAACAAGTGTTCC-AAATGAGCTAAAAACTT-CACAGTGGACTAATCTCACCAAAATGATTAT
* * * *
1490 AGTTAGGCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCCAAATC
258 AGTTAGGCCATAAACAATCGAAAGAAAAGCATTGA-GGTTTCCCAAATC
1539 CCGAATACGA
Statistics
Matches: 1125, Mismatches: 78, Indels: 44
0.90 0.06 0.04
Matches are distributed among these distances:
301 41 0.04
302 52 0.05
303 101 0.09
304 14 0.01
305 65 0.06
306 70 0.06
307 298 0.26
308 213 0.19
309 146 0.13
310 114 0.10
311 11 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (308 bp):
GACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
AAAACTTCACAGTGGTCTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
AGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAA
ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
TAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTCCCAAATCGAA
Found at i:1135 original size:461 final size:459
Alignment explanation
Indices: 4--1538 Score: 2238
Period size: 461 Copynumber: 3.3 Consensus size: 459
1 AAT
** ** * * *
4 GACGATTCAAAACGTCACTAATGGG-CCTTGATAGACCCAAAATAACCAAGAGTTCCAAATGAGC
1 GACGATTCAAAACGAAACTAATGGGCCCCGGA-AGGCCTAAAATAA-CAAGTGTTCCAAATGAGC
* * ** *
68 CAATAACTTCACAGTGTTCTAATCTCACCGAAATGATTATAGTTAGGCCATAAACAATGGAAAGA
64 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGA
* * * ** ** * * *
133 AAAGCATCAAGGGTTGCCAAGTCAAAGATGATTCAAAACGTCACTAATGGGCCTTGATAGACCCA
129 AAAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTA
* * ** * *
198 AAATAACAAGTGTTCCAAATGAGCCAAAAACTTCATAGTGTTCAAATCTCACCGAAATGATTATA
194 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
* * *
263 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGATTTCCCAAATCGAAGACGATTCAGAAAGA
259 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCA-AACGA
* *
328 CACTAATGGGTCCCGATAGGCCCAAAAT-ACAAGTGTT-CAAATGAGCTAAAAACTTCACAGTGT
323 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* * * *
391 TCTAATCTCACCGAAATGATTATAGTTAGGCCAT-AACAATGGAAG-AAAGCATCAAGGTTGCCA
388 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAGAAAAGCATCGAGGTTCCCA
454 AATCGAA
453 AATCGAA
* * * *
461 GACGATTC-AAACGGAACTAATGGGCCCTGGAAGGCATAAAATAACAAGTGTTCCAAAGGAGCTA
1 GACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCT-
*
525 AAAAACTTCACAGTGGACTAATCTCACCAAAAATGATTATAGTTAGGCCATAAACAATCGAAAGA
65 AAAAACTTCACAGTGGACTAATCTCACC-AAAATGATTATAGTTAGGCCATAAACAATGGAAAGA
** * *
590 AAAGCATTGAGGTTTACCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTA
129 AAAGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTA
655 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
194 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
* * * *
720 GTTAGGCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCGATGACGATTCAAATCGA
259 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA-CGA
* * *
785 AACTAATGGCCCCCGGA-AGGCCTAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
323 CACTAATGGGCCCC-GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* * * *
849 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAGAATCGAAGAAAAACATTGAGGTTTCC
387 GACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAGAAAAGCATCGAGG-TTCC
914 CAAATCGAA
451 CAAATCGAA
923 GACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
1 GACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
* *
988 AAAACTTCACAGTGGTCTAATCTCACCAAAATGATTACAGTTAGGCCATAAACAATGGAAAGAAA
66 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
*
1053 AGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAGAGGCCTAAA
131 AGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAA
1118 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
196 ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
* *
1183 TAGGCCATAAACAATCGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCA
261 TAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTC-AAACGACA
* * *
1248 CTGATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCGAATGAGTTAAAAACTTCACAGTGGAC
325 CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGAC
* * *
1313 TAATCTTAGCAAAAATGATTATAGTTAGCCCATAAACAATGGAAAGAAAAGCATCGAGGTTCCCA
390 TAATCTCA-CCAAAATGATTATAGTTAGGCCATAAACAATGG-AAGAAAAGCATCGAGGTTCCCA
*
1378 AATCGAT
453 AATCGAA
*
1385 GACGATTCAAAACGAAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAAATGAGCT
1 GACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCC-AAATGAGCT
* *
1450 AAAAACTTCCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACA
65 AAAAACTT-CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGA
*
1515 AAAGCATCGAGGGTTGCCCAAATC
129 AAAGCATCAAGGGTTG-CCAAATC
1539 CCGAATACGA
Statistics
Matches: 968, Mismatches: 92, Indels: 28
0.89 0.08 0.03
Matches are distributed among these distances:
455 16 0.02
456 51 0.05
457 233 0.24
458 11 0.01
459 57 0.06
460 11 0.01
461 288 0.30
462 145 0.15
463 82 0.08
464 67 0.07
465 7 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (459 bp):
GACGATTCAAAACGAAACTAATGGGCCCCGGAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA
AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
AGCATCAAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAA
ATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGT
TAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAACGACAC
TAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACT
AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAGAAAAGCATCGAGGTTCCCAAAT
CGAA
Done.