Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010988.1 Corchorus olitorius cultivar O-4 contig11020, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2219
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26


Found at i:1859 original size:21 final size:21

Alignment explanation


    Indices: 1833--1875  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1823 CTGAACCCAT

                                 
       1833 AAAGCTACTCAGGATACTTAG
          1 AAAGCTACTCAGGATACTTAG

                                 
       1854 AAAGCTACTCAGGATACTTAG
          1 AAAGCTACTCAGGATACTTAG

             
       1875 A
          1 A

       1876 CCAGAGAACA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23


Consensus pattern (21 bp):   
AAAGCTACTCAGGATACTTAG
Done.