Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000011.1 Corchorus olitorius cultivar O-4 contig00011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4031
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:3454 original size:14 final size:13

Alignment explanation


    Indices: 3422--3480  Score: 82
    Period size: 14  Copynumber: 4.2  Consensus size: 13

       3412 AAGAAACATC

                           
       3422 TTTCAAGAAAAGTGT
          1 TTTCAA-AAAAG-GT

                          
       3437 TTTCAAGAAAAGGT
          1 TTTCAA-AAAAGGT

                          
       3451 TTTCAAAAATAGGT
          1 TTTCAAAAA-AGGT

                         
       3465 TTTCAAAAAAGGT
          1 TTTCAAAAAAGGT

               
       3478 TTT
          1 TTT

       3481 AAGTCTTTTA


Statistics
Matches: 43,  Mismatches: 0, Indels: 4
        0.91            0.00        0.09

Matches are distributed among these distances:
  13   10  0.23
  14   21  0.49
  15   12  0.28

ACGTcount: A:0.41, C:0.07, G:0.17, T:0.36


Consensus pattern (13 bp):   
TTTCAAAAAAGGT
Done.