Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011002.1 Corchorus olitorius cultivar O-4 contig11034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1276
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Found at i:394 original size:154 final size:154

Alignment explanation


    Indices: 1--1276  Score: 2018
    Period size: 154  Copynumber: 8.3  Consensus size: 154

                                   *              *      *                   
          1 AAAAACTTCACAGTGGACTAATCACACCAAAATGATTACAGTTAGTCCATAAACAATGGAAAG-A
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                                                       *          *          
         65 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACGAATGGGCCCCAATAGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                                *    
        130 AAGT-ACAAGTGTTCCAAATCAGCT
        131 AA-TAACAAGTGTTCCAAATGAGCT

                                                         *               *   
        154 AAAAACTT-ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAGGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                                    *       *      **      *          *      
        218 AAGCATTGAGGTTTGCCAAATCGAGGACGATTGAAAACGGAACTAATTGGCCCCGATATGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                 *                  
        283 AATAATAAGTGTTCCAAATGAGCT
        131 AATAACAAGTGTTCCAAATGAGCT

                                                                             
        307 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                *         *                      *            *              
        372 AAGCCTTGAGGTTTACCAAATCGAAGACGATTCAAAATGTCACTAATGGGACCCGATAGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                               **   
        437 AATAACAAGTGTTCCAAATTTGCT
        131 AATAACAAGTGTTCCAAATGAGCT

              *                   *    *                                     
        461 AAGAACTTCACAGTGGACTAATTTCACGAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                                                                *            
        526 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCGCGATAGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                                  * 
        591 AATAACAAGTGTTCCAAATGAGTT
        131 AATAACAAGTGTTCCAAATGAGCT

                      *           *                      *                   
        615 AAAAACTTCATAGTGGACTAATTTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                                    *       *      **      *          *      
        680 AAGCATTGAGGTTTGCCAAATCGACGACGATTGAAAACGGAACTAATTGGCCCCGATATGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                      *             
        745 AATAACAAGTATTCCAAATGAGCT
        131 AATAACAAGTGTTCCAAATGAGCT

                                    *                    *                   
        769 AAAAACTTCACAGTGGACTAATCTGACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                                       *           **                        
        834 AAGCATTGAGGTTTGCCAAATCGAAGAAGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                    *            ** 
        899 AATAACAAATGTTCCAAATGATTT
        131 AATAACAAGTGTTCCAAATGAGCT

                                            *                                
        923 AAAAACTTCACAGTGGACTAATCTCACCAAAAAGATTATAGTTAGGCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                *         *                      *         *         *       
        988 AAGCCTTGAGGTTTACCAAATCGAAGACGATTCAAAATGTCACTAATAGGCCCCGATCGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                                    
       1053 AATAACAAGTGTTCCAAATGAGCT
        131 AATAACAAGTGTTCCAAATGAGCT

                                                                             
       1077 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA

                *                                               *            
       1142 AAGCCTTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCGCGATAGGCCCAA
         66 AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA

                    *             * 
       1207 AATAACAATTGTTCCAAATGAGTT
        131 AATAACAAGTGTTCCAAATGAGCT

                                  *   *                   
       1231 AAAAACTTCACAGTGGACTAATGTCATCAAAATGATTATAGTTAGG
          1 AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGG


Statistics
Matches: 1032,  Mismatches: 88, Indels: 5
        0.92            0.08        0.00

Matches are distributed among these distances:
 152   52  0.05
 153   94  0.09
 154  886  0.86

ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Consensus pattern (154 bp):   
AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAA
AAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAA
AATAACAAGTGTTCCAAATGAGCT

Done.