Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011011.1 Corchorus olitorius cultivar O-4 contig11044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31284

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1047--1071
11
2.3
11
100
0
50
64
28
0
8
1.22
8291--8322
16
1.9
17
93
6
57
81
0
9
9
0.88
10542--10586
15
2.9
15
83
6
54
33
0
13
53
1.40
17243--17367
27
4.6
27
94
1
223
43
6
0
50
1.28
19080--19151
35
2.1
35
86
0
99
30
1
30
37
1.66
19945--19987
22
2.0
22
95
0
77
39
9
11
39
1.74
23652--23726
35
2.1
35
92
0
123
18
22
13
45
1.84
24655--24724
35
2.0
35
97
0
131
47
14
20
18
1.83
26245--26270
12
2.2
12
100
0
52
53
7
26
11
1.63
26257--26332
22
3.3
22
74
13
80
51
9
23
15
1.72
27114--27160
26
1.9
26
83
12
64
46
0
29
23
1.52

Tables:   1

The End!