Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011015.1 Corchorus olitorius cultivar O-4 contig11048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:391 original size:156 final size:154

Alignment explanation


    Indices: 1--1239  Score: 1865
    Period size: 154  Copynumber: 8.0  Consensus size: 154

                          *                    *                             
          1 ACGTTTTGTAATCGTCTTCGATTTGGC-AACCTTCGATGAC-TTTCTTTCCATTGTTTATGGCCT
          1 ACGTTTTG-AATCGCCTTCGATTTGGCAAACC-TCAATG-CTTTTCTTTCCATTGTTTATGGCCT

                                                                             
         64 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
         63 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA

                             *         
        129 TTTTGGGCCTATCGGGGACCATTAGTG
        128 TTTTGGGCCTATCGGGGCCCATTAGTG

                        ** *                                      *          
        156 ACGTTTTGAATCATCATCGATTTGGCAAACC-CGAATGCTTTTCTTTCCATTGTGTATGGCCTAA
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTC-AATGCTTTTCTTTCCATTGTTTATGGCCTAA

                                                *                 *        * 
        220 CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGATTTTAGCTCATTTGGAAAACTTGTTTTT
         65 CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG-TTAT

                     *      *         
        285 TTTGGGCCTTTCGGGGACCATTAGTG
        129 TTTGGGCCTATCGGGGCCCATTAGTG

                                                                             
        311 ACGTTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAA
          1 ACG-TTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAA

                                                                             
        376 CTATAATCATTTTGGTGAGATTTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
         65 CTATAATCATTTTGGTGAGA-TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT

                 *                     
        441 TTT-GACACTATCGGGGCCCATTAGTG
        129 TTTGGGC-CTATCGGGGCCCATTAGTG

              *         *    *            *                      *           
        467 ACCTTTTGAATCNCCTTTGATTTGGCAAACGTCAATGCCTTTTCTTTCCATTGGTTATGGCCTAA
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATG-CTTTTCTTTCCATTGTTTATGGCCTAA

             *            *                *                                 
        532 CAATAATCATTTTGTTGAGATTAGTCCACTGAGAAGTTTTTAGCTCATTTGGAACACTTGTTATT
         65 CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT

               *                     
        597 TTGAGCCTATCGGGGCCCATTAGTG
        130 TTGGGCCTATCGGGGCCCATTAGTG

              *        *                *                                    
        622 ACCTTTTGAATTGCCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC

                                                *                           *
        687 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTATTTAGCTCATTTGGAACACTTGTTATTC
         66 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT

              *                    *
        752 TGTGCCTATCGGGGCCCATTAGTT
        131 TGGGCCTATCGGGGCCCATTAGTG

            *            *              *                                    
        776 CCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC

                                                *    *              *        
        841 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTATTTACCTCATTTGGAACACATGTTATTT
         66 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT

              *               *     
        906 TGAGCCTATCGGGGCCCAATAGTG
        131 TGGGCCTATCGGGGCCCATTAGTG

                                                                             
        930 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTAA
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGGCCTAA

                              *        *  *               *                  
        995 CTATAATCATTTTGGTGAAATTAGTCCTCTTTGAAGTTTTTAGCTCCTTTGGAACACTTGTTATT
         65 CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT

                             *       *
       1060 TTGGGTCCTATCGGGGCGCATTAGTT
        130 TTGGG-CCTATCGGGGCCCATTAGTG

            *            *              *                     *              
       1086 CCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTTCCAATGTTTATGGCCTAA
          1 ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTC-TTTCCATTGTTTATGGCCTAA

                         *  *             *                                  
       1151 CTATAATCATTTTAGTAAGATTAGTCCACTTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT
         65 CTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT

                  *     *  *        
       1216 TTGGGCATATCGAGGACCATTAGT
        130 TTGGGCCTATCGGGGCCCATTAGT

       1240 TCCATTTTGA


Statistics
Matches: 993,  Mismatches: 78, Indels: 26
        0.91            0.07        0.02

Matches are distributed among these distances:
 153    2  0.00
 154  389  0.39
 155  281  0.28
 156  282  0.28
 157   39  0.04

ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40


Consensus pattern (154 bp):   
ACGTTTTGAATCGCCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
TGGGCCTATCGGGGCCCATTAGTG

Done.