Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011017.1 Corchorus olitorius cultivar O-4 contig11050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1436
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38


Found at i:281 original size:154 final size:154

Alignment explanation


    Indices: 1--1226  Score: 1812
    Period size: 154  Copynumber: 8.0  Consensus size: 154

                                *                    *                       
          1 GTTTATGGCCTAACTATAATTATTTTGGTGAGATTAGTCCAGTGTGAAGTTTTTAGCTCATTTGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

              *   *                   *    *     *           * *             
         66 AATACTCGTTATTTTGGGCCTATCGGAGCCCTTTAGTTACGTATTGAATAGCCTTCGATTTGGCA
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA

             *         *   *        
        131 AGCCTCAATGCGTTTGTTTCCATT
        131 AACCTCAATGCTTTTCTTTCCATT

                     *  *              * *             *                     
        155 GTTTATGGCGTACCTATAATCATTTTGTTTAGATTAGTCCACTATGAAGTTTTTAGCTCATTTGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                          *       *    *    *               *
        220 AACACTTGTTATTTTGGGCCTATCGGGGCCAATTAGT-TCTGTTTTGAGTCGTCTTCGATTTGGG
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTATTGAATCGTCTTCGATTTGGC

                                     
        284 AAACCTCAATGC-TTTCTTTCCATT
        130 AAACCTCAATGCTTTTCTTTCCATT

                                                                             
        308 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA-TAGTGAAGTTTTTAGCTCATTTG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT-GTGAAGTTTTTAGCTCATTTG

                *                                                  *         
        372 GAACCCTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTACGATTTGGC
         65 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                 *   
        437 AAACCTCAATGCTTTTCTTTCAATT
        130 AAACCTCAATGCTTTTCTTTCCATT

                                                   *                         
        462 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCGACTGTGAAGTTTTTAGCTCATTTGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

              *   *                   *    *     *           * *    *        
        527 AATACTCGTTATTTTGGGCCTATCGGAGCCCTTTAGTTACGTATTGAATAGCCTTCAATTTGGCA
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA

                       *          * 
        592 AACCTCAATGCCTTTCTTTCCAAT
        131 AACCTCAATGCTTTTCTTTCCATT

                                                                             
        616 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTCAGTCCACTGTGAAG-TTTTAGCTCATTTG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATT-AGTCCACTGTGAAGTTTTTAGCTCATTTG

                                    * *           **   *                     
        680 GAACACTTGTTATTTTGGGCCTATTGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC
         65 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGC

                                   * 
        745 AAACCTCAATGCTTTTCTTTCCAAT
        130 AAACCTCAATGCTTTTCTTTCCATT

                                                       *    *   *       **   
        770 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTCTGAACTTTATAGCTCAGATGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                                         *                   
        835 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTAAATCGTCTTCGATTTGGCA
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA

                                    
        900 AACCTCAATGCTTTTCTTTCCATT
        131 AACCTCAATGCTTTTCTTTCCATT

                         *                             *    *   *       *    
        924 GTTTATGGCCTAAGTATAATCATTTTGGTGAGATTAGTCCACTCTGAACTTTATAGCTCAGTTGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                                                                         *   
        989 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTAGCA
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA

                                    
       1054 AACCTCAATGCTTTTCTTTCCATT
        131 AACCTCAATGCTTTTCTTTCCATT

                          *       * *    *           *      *  *    *        
       1078 GTTTATGGCCTAACCATAATCAATATGGTCAGATTAGTCCATTGTGAACTTCTTAGGTCATTTGG
          1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

              *            *                         *                       
       1143 AATACTTGTTATTTTAGGCCTATCGGGGCCCATTAGTGACGCATTGAATCGTCTTCGATTTGGCA
         66 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA

                               
       1208 AACCTCAATGCTTTTCTTT
        131 AACCTCAATGCTTTTCTTT

       1227 GATACGAATC


Statistics
Matches: 974,  Mismatches: 91, Indels: 14
        0.90            0.08        0.01

Matches are distributed among these distances:
 152    1  0.00
 153  149  0.15
 154  810  0.83
 155   14  0.01

ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39


Consensus pattern (154 bp):   
GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCGATTTGGCA
AACCTCAATGCTTTTCTTTCCATT

Done.