Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011018.1 Corchorus olitorius cultivar O-4 contig11051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1759
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Found at i:546 original size:152 final size:153
Alignment explanation
Indices: 1--1755 Score: 2671
Period size: 152 Copynumber: 11.5 Consensus size: 153
* *
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGG-CCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* * *
65 TTGGTAACCTCAATGCTTTTCTTTCCATTCTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
130 GTCCACTGTGAAGTTTTTAGCTC
131 GTCCACTGTGAAGTTTTTAGCTC
* *
153 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTCTGAATTGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* *
218 TTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTACCTATAATCATTTTTGGTGAGAG
66 TT-GGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGAT
*
283 TAGTCCACTGTGAAGTTTTTTAGGTC
129 TAGTCCACTGTGAAG-TTTTTAGCTC
* * * *
309 ATTTTCGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAGT-TCCGTTTTGAATCATAC-TC
1 A-TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTTTGAATCGT-CTTC
* *
371 GATTTGGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-GTGAG
63 GATTTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
*
435 ATTAGTCCATTGTGAAGTTTTTAGCTC
127 ATTAGTCCACTGTGAAGTTTTTAGCTC
*
462 ATTTGGAACACTTATTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTT-GAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* * *
526 TTGAGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTCTTATCATTTTCGTGAGATT
66 TTG-GAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
591 AGTCCACTGTGAAGTTTTTAGCTC
130 AGTCCACTGTGAAGTTTTTAGCTC
*
615 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA-
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* *
679 TTGGTAACCTCAATGC-TTTCTTTCCATTGTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
743 GTCCACTGTGAAGTTTTTAGCTC
131 GTCCACTGTGAAGTTTTTAGCTC
* * * *
766 ATTTTGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAGT-TCCGTTTTGAATCGTATTCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTTTGAATCGTCTTCGA
* * ** *
829 TTTGGCAACCTCGAA-GCTTTTGTTTCCATTGTTTATGGGTTAACTATAATCATTTTGGTGAGAA
65 TTTGGAAACCTC-AATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
*
893 TAGTCTTA-TGTGAAGTTTTTAGCTC
129 TAGTC-CACTGTGAAGTTTTTAGCTC
*
918 ATTTGGAACACTTG-TATTTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGTAATCGTCTTTG
1 ATTTGGAACACTTGTTA-TTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTG-AATCGTCTTCG
* * * *
982 ATTTGAGAAACCTCAATGCTTTTCGTTCCGATTGTTTATGGCCTAACTCTTATCATTTTCGTGAG
64 ATTTG-GAAACCTCAATGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
1047 ATTAGTCCACTGTGAAGTTTTTAGCTC
127 ATTAGTCCACTGTGAAGTTTTTAGCTC
*
1074 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTCTGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
*
1139 TTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTACCTATAATCATTTTGGTGAGATT
66 TT-GGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
*
1204 AGTCCACTGTGAAGTTTTTAGGTC
130 AGTCCACTGTGAAGTTTTTAGCTC
* *
1228 ATTTGGAACACTTG-TA-TTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* * *
1291 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTTAACTCTAATCATTTTCGTGAGATT
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCC-TAACTATAATCATTTTGGTGAGATT
*
1356 AGTCCACTGTGAAGTTTTTAGGTC
130 AGTCCACTGTGAAGTTTTTAGCTC
* *
1380 ATTTGGAACACTTGTTA-TTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
* *
1444 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGATTA
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
*
1509 GTCCAACTGTGAAGTTTTTAACTC
131 GTCC-ACTGTGAAGTTTTTAGCTC
*
1533 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
*
1598 TTGGCAAACCTCAATGCTTTTCTTTCGATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
66 TTGG-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
*
1663 AGTCTACTGTGAAGTTTTTAGCTC
130 AGTCCACTGTGAAGTTTTTAGCTC
* * * *
1687 ATTTGGAACACTTGTTATTTTAGGCCT-TCCGGGGCCCTTTAGTTTCGTTTTGAATCGTCATCGA
1 ATTTGGAACACTTGTTATTTTGGGCCTAT-CGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGA
1751 TTTGG
65 TTTGG
1756 CAAC
Statistics
Matches: 1471, Mismatches: 97, Indels: 68
0.90 0.06 0.04
Matches are distributed among these distances:
150 26 0.02
151 148 0.10
152 355 0.24
153 296 0.20
154 284 0.19
155 148 0.10
156 181 0.12
157 33 0.02
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (153 bp):
ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGAT
TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
GTCCACTGTGAAGTTTTTAGCTC
Found at i:1107 original size:459 final size:459
Alignment explanation
Indices: 1--1759 Score: 2760
Period size: 459 Copynumber: 3.8 Consensus size: 459
*
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGG-CCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
* * * *
65 TTGGTAACCTCAATGCTTTTCTTTCCATTCTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTCGTGAGATTA
130 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
131 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* *
195 TGTCGTTCTGAATTGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
196 TGACGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
* * * *
260 CCTATAATCATTTTTGGTGAGAGTAGTCCACTGTGAAGTTTTTTAGGTCATTTTCGAACACTTGT
261 ACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCA-TTTGGAACACTTGT
* * *
325 TATTTTAGGCCTTTCGGGG-CCATTAGTTCCGTTTTGAATCATACTCGATTTGGCAACCCTCGAT
323 TATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTTGGCAA-CCTCGAA
* *
389 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGTGAGATTAGTCCATTGTGAAGTT
387 GCTTTTCTTTCCATTGTTTATGGCTTAACTATAATCATTTTGTGAGATTAGTCCACTGTGAAGTT
454 TTTAGCTC
452 TTTAGCTC
* *
462 ATTTGGAACACTTATTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTT-GAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
* *
526 TTGAGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTCTTATCATTTTCGTGAGATT
66 TTG-GAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTCGTGAGATT
591 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
130 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
* *
656 GTGACGTTTTGAATCGTCTTCGA-TT-GGTAACCTCAATGC-TTTCTTTCCATTGTTTATGGCCT
195 GTGACGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
* *
718 AACTAAAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTTGAACACTTGTTA
260 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
783 TTTTAGGCCTTTCGGGG-CCATTAGTTCCGTTTTGAATCGTATTCGATTTGGCAACCTCGAAGCT
325 TTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTTGGCAACCTCGAAGCT
* * * *
847 TTTGTTTCCATTGTTTATGGGTTAACTATAATCATTTTGGTGAGAATAGTCTTA-TGTGAAGTTT
390 TTTCTTTCCATTGTTTATGGCTTAACTATAATCATTTT-GTGAGATTAGTC-CACTGTGAAGTTT
911 TTAGCTC
453 TTAGCTC
* *
918 ATTTGGAACACTTG-TATTTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGTAATCGTCTTTG
1 ATTTGGAACACTTGTTA-TTTTGGGCCTATCGGGGCCCATTAGTGTCGTTATG-AATCGTCTTCG
* * *
982 ATTTGAGAAACCTCAATGCTTTTCGTTCCGATTGTTTATGGCCTAACTCTTATCATTTTCGTGAG
64 ATTTG-GAAACCTCAATGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCATTTTCGTGAG
1047 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
127 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
*
1112 TTAGTGTCGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGG
192 TTAGTGACGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGG
* *
1177 CCTACCTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGGTCATTTGGAACACTTG
257 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG
* * * *
1242 -TA-TTT-GTGCCTATCGGGGCCCATTAGTGT-CGTTATGAATCGTCTTCGATTTGGTAACCTC-
322 TTATTTTAG-GCCTTTCGGGGCCCATTAGT-TCCGTTTTGAATCGTATTCGATTTGGCAACCTCG
*
1302 AATGCTTTTCTTTCCATTGTTTATGGCCTTAACTCTAATCATTTTCGTGAGATTAGTCCACTGTG
385 AA-GCTTTTCTTTCCATTGTTTATGG-CTTAACTATAATCATTTT-GTGAGATTAGTCCACTGTG
*
1367 AAGTTTTTAGGTC
447 AAGTTTTTAGCTC
*
1380 ATTTGGAACACTTGTTA-TTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
*
1444 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-GCTGAGATT
66 TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTCG-TGAGATT
*
1508 AGTCCAACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
130 AGTCC-ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
* * *
1573 AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCGATTGTTTATGGCC
194 AGTGACGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCC
*
1638 TAACTATAATCATTTTGGTGAGATTAGTCTACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
259 TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* * *
1703 ATTTTAGGCCTTCCGGGGCCCTTTAGTTTCGTTTTGAATCGTCA-TCGATTTGGCAAC
324 ATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGT-ATTCGATTTGGCAAC
Statistics
Matches: 1206, Mismatches: 67, Indels: 50
0.91 0.05 0.04
Matches are distributed among these distances:
455 46 0.04
456 143 0.12
457 21 0.02
458 94 0.08
459 357 0.30
460 48 0.04
461 190 0.16
462 305 0.25
463 2 0.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (459 bp):
ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
TTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTCGTGAGATTA
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
TGACGTTCTGAATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
TTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTTGGCAACCTCGAAGCTT
TTCTTTCCATTGTTTATGGCTTAACTATAATCATTTTGTGAGATTAGTCCACTGTGAAGTTTTTA
GCTC
Found at i:1167 original size:613 final size:612
Alignment explanation
Indices: 1--1755 Score: 2718
Period size: 613 Copynumber: 2.9 Consensus size: 612
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGG-CCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
*
65 TTGGTAACCTCAATGCTTTTCTTTCCATTCTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
66 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
130 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
131 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAG
* *
195 TGTCGTTCTGAATTGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
195 TGTCGTTATGAATCGTCTTCGATTT-GGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
* * * * *
260 CCTATAATCATTTTTGGTGAGAGTAGTCCACTGTGAAGTTTTTTAGGTCATTTTCGAACACTTGT
259 ACTATAATCA-TTTTGGTGAGAATAGTCAACTGTGAAG-TTTTTAGCTCA-TTTGGAACACTTGT
* * * * *
325 TATTTTAGGCCTTTCGGGG-CCATTAGT-TCCGTTTTGAATCATAC-TCGATTTGGCAACCCTCG
321 TATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTTTGAATCGT-CTTCGATTTGGCAAACCTCA
*
387 ATGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCATTTTGTGAGATTAGTCCATTGTGAA
384 ATGCTTTTC-TTCCGATTGTTTATGGCCTAACTATAATCATTTTGTGAGATTAGTCCACTGTGAA
*
451 GTTTTTAGCTCATTTGGAACACTTATTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAA
448 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAA
* * *
516 TCGTCTT-GATTTGAGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTCTTATCATT
513 TCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATT
580 TTCGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
578 TTCGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * *
615 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA-
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
679 TTGGTAACCTCAATGC-TTTCTTTCCATTGTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
66 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
* *
743 GTCCACTGTGAAGTTTTTAGCTCATTTTGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAG
131 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGGCCCATTAG
* * * * **
807 T-TCCGTTTTGAATCGTATTCGATTTGGCAACCTCGAA-GCTTTTGTTTCCATTGTTTATGGGTT
195 TGT-CGTTATGAATCGTCTTCGATTTGGAAACCTC-AATGCTTTTCTTTCCATTGTTTATGGCCT
*
870 AACTATAATCATTTTGGTGAGAATAGTCTTA-TGTGAAGTTTTTAGCTCATTTGGAACACTTG-T
258 AACTATAATCATTTTGGTGAGAATAGTC-AACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
*
933 ATTTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGTAATCGTCTTTGATTTGAG-AAACCTCA
322 A-TTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTG-AATCGTCTTCGATTTG-GCAAACCTCA
* *
997 ATGCTTTTCGTTCCGATTGTTTATGGCCTAACTCTTATCATTTTCGTGAGATTAGTCCACTGTGA
384 ATGCTTTTC-TTCCGATTGTTTATGGCCTAACTATAATCATTTT-GTGAGATTAGTCCACTGTGA
*
1062 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTCTGA
447 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGA
*
1127 ATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTACCTATAATCAT
512 ATCGTCTTCGATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCAT
* *
1192 TTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGGTC
577 TTTCGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
1228 ATTTGGAACACTTG-TA-TTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
1 ATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
** *
1291 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTTAACTCTAATCATTTTCGTGAGATT
66 TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCC-TAACTAAAATCATTTTGGTGAGATT
*
1356 AGTCCACTGTGAAGTTTTTAGGTCATTTGGAACACTTGTTA-TTTGTGCCTATCGGGGCCCATTA
130 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG-GCCTATCGGGGCCCATTA
*
1420 GTGTCGTTATGAATCGTCTTCGATTTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
194 GTGTCGTTATGAATCGTCTTCGATTTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
* * *
1485 ACTATAATCATTTTGCTGAGATTAGTCCAACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTA
259 ACTATAATCATTTTGGTGAGAATAGT-CAACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
*
1550 TTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
323 TTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
* *
1615 TTTTCTTTCGATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCTACTGTGAAGTTT
388 TTTTCTTCCGATTGTTTATGGCCTAACTATAATCATTTT-GTGAGATTAGTCCACTGTGAAGTTT
* * *
1680 TTAGCTCATTTGGAACACTTGTTATTTTAGGCCT-TCCGGGGCCCTTTAGTTTCGTTTTGAATCG
452 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTAT-CGGGGCCCATTAGTGTCGTTTTGAATCG
*
1744 TCATCGATTTGG
516 TCTTCGATTTGG
1756 CAAC
Statistics
Matches: 1048, Mismatches: 68, Indels: 51
0.90 0.06 0.04
Matches are distributed among these distances:
607 2 0.00
608 27 0.03
609 26 0.02
610 55 0.05
611 114 0.11
612 139 0.13
613 363 0.35
614 227 0.22
615 93 0.09
616 2 0.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (612 bp):
ATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCATTAGTGTCGTTATGAATCGTCTTCGAT
TTGGTAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAAAATCATTTTGGTGAGATTA
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGCCTATCGGGGCCCATTAGT
GTCGTTATGAATCGTCTTCGATTTGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
TATAATCATTTTGGTGAGAATAGTCAACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
TGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTT
TCTTCCGATTGTTTATGGCCTAACTATAATCATTTTGTGAGATTAGTCCACTGTGAAGTTTTTAG
CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTC
GATTTGGGAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTCGTGAG
ATTAGTCCACTGTGAAGTTTTTAGCTC
Done.