Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011023.1 Corchorus olitorius cultivar O-4 contig11056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1093
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27


Found at i:1048 original size:19 final size:19

Alignment explanation


    Indices: 1024--1064  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1014 CAGCGGGCGT

                               
       1024 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

                               
       1043 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

               
       1062 AAG
          1 AAG

       1065 CGGGAATCGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Consensus pattern (19 bp):   
AAGACTAGCTCTGTCTTGA
Done.