Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011025.1 Corchorus olitorius cultivar O-4 contig11058, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40


Found at i:421 original size:154 final size:154

Alignment explanation


    Indices: 1--1168  Score: 1953
    Period size: 154  Copynumber: 7.6  Consensus size: 154

                                                                             
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

             *            *            *                 **                  
         66 TGATTTGGAACACTAGTTATTTT-GGCATATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCG
         66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                                    
        130 ATTTGGCAAACCTCAATGCTTTTC
        131 ATTTGGCAAACCTCAATGCTTTTC

                                                                             
        154 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTGAGATTTAGTCCACTGTGAAGTTTTTA
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGG-TGAGA-TTAGTCCACTGTGAAGTTTTTA

                                                    *         *              
        219 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCTATTAGTGACATTTTGAATCGTCTT
         64 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT

                                      
        284 CGATTTGGCAAACCTCAATGCTTTTC
        129 CGATTTGGCAAACCTCAATGCTTTTC

                            *    *  *                                        
        310 TTTCCATTGTTTATGGACTAATTAAAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                                     *                                       
        375 TCATTTGGAACACTTGTTATTTTGGACCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
         66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                                    
        440 ATTTGGCAAACCTCAATGCTTTTC
        131 ATTTGGCAAACCTCAATGCTTTTC

                                          *                            *     
        464 TTTCCATTGTTTATGGCCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                                                          **                 
        529 TCATTTGGAACTACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTC
         66 TCATTTGGAAC-ACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC

                             *       
        594 GATTTGGCAAACCTCAAAGC-TTTC
        130 GATTTGGCAAACCTCAATGCTTTTC

                                          *        *             *     *     
        618 TTTCCATTGTTTATGGCCTAACTATAATCAATTTGGTGAAATTAGTCCACTGTAAAGTTCTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

               *     *       *                    *         *                
        683 TCAATTGGATCACTTGTAATTTTGGGCCTATCGGGGCCTATTAGTGACATTTTGAATCGTCTTCG
         66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                                    
        748 ATTTGGCAAACCTCAATGCTTTTC
        131 ATTTGGCAAACCTCAATGCTTTTC

                            *    *  *                                        
        772 TTTCCATTGTTTATGGACTAATTAAAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                                     *                                       
        837 TCATTTGGAACACTTGTTATTTTGGACCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
         66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                                    
        902 ATTTGGCAAACCTCAATGCTTTTC
        131 ATTTGGCAAACCTCAATGCTTTTC

                                          *                            *     
        926 TTTCCATTGTTTATGGCCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                     *    *                                 *                
        991 TCATTTGGATCACTAGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCG
         66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                             *      
       1056 ATTTGGCAAACCTCAATACTTTTC
        131 ATTTGGCAAACCTCAATGCTTTTC

                                *                  *                         
       1080 TTTCCATTGTTTATGGCCTATCTATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGC
          1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                              *     
       1145 TCATTTGGAACACTTGTTGTTTTG
         66 TCATTTGGAACACTTGTTATTTTG


Statistics
Matches: 948,  Mismatches: 62, Indels: 9
        0.93            0.06        0.01

Matches are distributed among these distances:
 153  103  0.11
 154  633  0.67
 155  119  0.13
 156   93  0.10

ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40


Consensus pattern (154 bp):   
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
ATTTGGCAAACCTCAATGCTTTTC

Done.