Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011027.1 Corchorus olitorius cultivar O-4 contig11060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2043
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1595 original size:21 final size:21

Alignment explanation


    Indices: 1569--1702  Score: 184
    Period size: 21  Copynumber: 6.4  Consensus size: 21

       1559 TGCTAGAAGT

                                  
       1569 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
       1590 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
       1611 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
       1632 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1653 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       1674 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

            *       
       1695 ACATTGGA
          1 TCATTGGA

       1703 ATTGCCTAAG


Statistics
Matches: 107,  Mismatches: 5, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  20    2  0.02
  21  105  0.98

ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.