Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011032.1 Corchorus olitorius cultivar O-4 contig11065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838
Length: 1398
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Found at i:475 original size:155 final size:155
Alignment explanation
Indices: 1--611 Score: 915
Period size: 156 Copynumber: 3.9 Consensus size: 155
* * * * *
1 GCTCATTTGGAACACCTGTTATTTTGTGCCTATCGAGG-CCTATTAGTTCCGTTTTGAATTGTTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACC-ATTAGTTACGTTTTGAATCGTCT
*
65 TCGATTTGGCAAACCTCGATGTCTTTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
65 TCGATTTGGCAAACCTCGATG-CTCTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGG
*
130 TGAGATTTGTCCACTGTGAAGTTTTTG
129 TGAGATTTGTCCACTGTGAAGTTTTTA
* * * * *
157 GCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTTCCGTTTTGAATTGTTTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTTACGTTTTGAATCGTCTT
* *
222 CGATTTGGCAAACCTCAATGCTTTTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
66 CGATTTGGCAAACCTCGATGC-TCTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
*
287 GAGATTTGTCCACTGTGAAGGTTTTA
130 GAGATTTGTCCACTGTGAAGTTTTTA
* * *
313 CCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTTACGTTTTGAATCGTCTT
* * *
378 CGATCTGGCAAACGTTCGATGC-CTTTTTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGT
66 CGATTTGGCAAAC-CTCGATGCTCTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
442 GAGATTTGTCCACTGTGAAGTTTTTA
130 GAGATTTGTCCACTGTGAAGTTTTTA
* * *
468 GCTCATTTGGAACACTTGTGATTTTGGGCCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTT
1 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTTACGTTTTGAATCGTCTT
*
533 CGATTTGGC-AACCTTCGATGC-CTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
66 CGATTTGGCAAACC-TCGATGCTCTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
*
596 GAGATTAGTCCACTGT
130 GAGATTTGTCCACTGT
612 CAATGCTTTT
Statistics
Matches: 425, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
154 65 0.15
155 136 0.32
156 216 0.51
157 8 0.02
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (155 bp):
GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTTACGTTTTGAATCGTCTT
CGATTTGGCAAACCTCGATGCTCTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
AGATTTGTCCACTGTGAAGTTTTTA
Found at i:656 original size:64 final size:64
Alignment explanation
Indices: 550--675 Score: 225
Period size: 64 Copynumber: 2.0 Consensus size: 64
540 GCAACCTTCG
*
550 ATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTCA
1 ATGCCTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTCA
* *
614 ATGCTTTTCTTTCCTTTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
1 ATGCCTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
676 GAAGTTTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.44
Consensus pattern (64 bp):
ATGCCTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTCA
Found at i:941 original size:371 final size:374
Alignment explanation
Indices: 236--982 Score: 1250
Period size: 371 Copynumber: 2.0 Consensus size: 374
226 TTGGCAAACC
* * *
236 TCAATGCTTTTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTTGTCCACT
1 TCAATGC-TTTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
*
301 GTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTT
65 GTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTGACGTT
* * * *
366 TTGAATCGTCTTCGATCTGGCAAACGTTCGATGCCTTTTTTTCCATTGTTTATAGCCTAACTATA
130 CTGAATCGTCTTCGATCTGGCAAACGCTCAATGCCTTTTTTTCCATTATTTATAGCCTAACTATA
*
431 ATCATTTTGGTGAGATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTGATTTTGGG
195 ATCATTTTAGTGAGATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTGATTTTGGG
496 CCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAACCTTCGATGCCTTTCTT
260 CCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAACCTTCGATGCCTTTCTT
561 TCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-GATTAGTCCACTG
325 TCCATTGTTTATGGCCTAACTATAATCATTTTGGTGATG-TTAGTCCACTG
*
611 TCAATGC-TTTTCTTTCCTTTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
1 TCAATGCTTTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
* * * **
675 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGTCCCATTAGTGAC-TTC
66 TGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTGACGTTC
* * *
739 TGAATCGTCTTCGATTTGGCAAAC-CTCAATGCTTTTTTTTCCATTATTTATGGCCTAACTATAA
131 TGAATCGTCTTCGATCTGGCAAACGCTCAATGCCTTTTTTTCCATTATTTATAGCCTAACTATAA
* *
803 TCATTTTAGTGAGATTTGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
196 TCATTTTAGTGAGATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTGATTTTGGGC
*
868 CTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCTTCGATGCCTTTCTTT
261 CTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAACCTTCGATGCCTTTCTTT
*
933 CCATTGTTTATGGCCTAACTATTATCATTTTGGTGATGTTAGTCCACTG
326 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGATGTTAGTCCACTG
982 T
1 T
983 GAAGTTTTTA
Statistics
Matches: 349, Mismatches: 22, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
371 208 0.60
372 26 0.07
373 108 0.31
375 7 0.02
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (374 bp):
TCAATGCTTTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
TGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGACCATTAGTGACGTTC
TGAATCGTCTTCGATCTGGCAAACGCTCAATGCCTTTTTTTCCATTATTTATAGCCTAACTATAA
TCATTTTAGTGAGATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTGATTTTGGGC
CTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAACCTTCGATGCCTTTCTTT
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGATGTTAGTCCACTG
Found at i:984 original size:154 final size:154
Alignment explanation
Indices: 611--1398 Score: 1165
Period size: 154 Copynumber: 5.1 Consensus size: 154
601 TAGTCCACTG
* *
611 TCAATGCTTTTCTTTCCTTTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
* * ** *
676 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGTCCCATTAGTGAC-TTCT
66 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTT
740 GAATCGTCTTCGATTTGGCAAACC
131 GAATCGTCTTCGATTTGGCAAACC
* * * * *
764 TCAATGCTTTTTTTTCCATTATTTATGGCCTAACTATAATCATTTTAGTGAGATTTGTCCATTGT
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
829 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTT
66 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTT
894 GAATCGTCTTCGATTTGGC-AACC
131 GAATCGTCTTCGATTTGGCAAACC
* * *
917 TTCGATGCCTTTCTTTCCATTGTTTATGGCCTAACTATTATCATTTTGGTGATG-TTAGTCCACT
1 -TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-GATTAGTCCACT
* *
981 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG-CTCATTTGT-CCGT
64 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGAC-CATTAGTGACGT
1044 TTTGAATCGTCTTCGATTTGGCAAACC
128 TTTGAATCGTCTTCGATTTGGCAAACC
* * * * *
1071 TCAATGCTTTTCTTTCTAATTCTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTCCACTA
1 TCAATGCTTTTCTTTC-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
*
1136 TGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGACCCATTAGTGACAT
65 TGAAG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGA-CCATTAGTGACGT
* *
1200 ATTGAATCGTCTTCGATTTGTCAAACC
128 TTTGAATCGTCTTCGATTTGGCAAACC
* * *
1227 TCAATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTCCACTGT
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
* * * *
1292 GAACTTTATAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATT
66 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTT
* *
1357 GAAATCTTCTTCGATTTGACAAACC
131 G-AATCGTCTTCGATTTGGCAAACC
1382 TCAATGCTTTTCTTTCC
1 TCAATGCTTTTCTTTCC
Statistics
Matches: 576, Mismatches: 46, Indels: 24
0.89 0.07 0.04
Matches are distributed among these distances:
153 159 0.28
154 238 0.41
155 136 0.24
156 43 0.07
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (154 bp):
TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTT
GAATCGTCTTCGATTTGGCAAACC
Found at i:1107 original size:525 final size:528
Alignment explanation
Indices: 89--1134 Score: 1719
Period size: 525 Copynumber: 2.0 Consensus size: 528
79 CTCGATGTCT
* * *
89 TTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTTGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* ** * *
154 TTGGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTTCCGTTTTGAATTGT
66 TTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTGACGTTCTGAATCGT
* *
219 TTTCGATTTGGCAAACCTCAATGCTTTTTTTTTTCCATTGTTTATGGCCTAACTATAATCATTTT
131 CTTCGATTTGGCAAACCTCAATGC-TTTTTTTTTCCATTATTTATGGCCTAACTATAATCATTTT
*
284 GGTGAGATTTGTCCACTGTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
195 AGTGAGATTTGTCCACTGTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
* *
349 GGACCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACGTTCGATGCCTTTTTTTCCATTG
260 GGACCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCTTCGATGCCTTTCTTTCCATTG
*
414 TTTATAGCCTAACTATAATCATTTTGGTGAGATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGA
325 TTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
479 ACACTTGTGATTTTGGGCCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAA
390 ACACTTGTGATTTTGGGCCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAA
* * *
544 CCTTCGATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
455 CCTTCAATGCCTTTCTTTCAATTCTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
609 TGTCAATGC
520 TGTCAATGC
*
618 TTTTCTTTCCTTTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
*
683 TTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGTCCCATTAGTGAC-TTCTGAATCGT
66 TTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTGACGTTCTGAATCGT
747 CTTCGATTTGGCAAACCTCAATGC-TTTTTTTTCCATTATTTATGGCCTAACTATAATCATTTTA
131 CTTCGATTTGGCAAACCTCAATGCTTTTTTTTTCCATTATTTATGGCCTAACTATAATCATTTTA
* * *
811 GTGAGATTTGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGG
196 GTGAGATTTGTCCACTGTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGG
*
876 GACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC-AACCTTCGATGCCTTTCTTTCCATTGT
261 GACCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCTTCGATGCCTTTCTTTCCATTGT
* *
940 TTATGGCCTAACTATTATCATTTTGGTGATG-TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
326 TTATAGCCTAACTATAATCATTTTGGTGA-GATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
* * *
1004 ACACTTGTTATTTTGGGCCTATCGGGG-CTCATTTGT-CCGTTTTGAATCGTCTTCGATTTGGCA
390 ACACTTGTGATTTTGGGCCTATCGGGGAC-CATTAGTAACGTTTTGAATCGTCTTCGATTTGGC-
* * *
1067 AACC-TCAATGCTTTTCTTTCTAATTCTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTC
453 AACCTTCAATGCCTTTCTTTC-AATTCTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
1131 CACT
517 CACT
1135 ATGAAGTTTT
Statistics
Matches: 482, Mismatches: 31, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
524 40 0.08
525 163 0.34
526 137 0.28
528 32 0.07
529 110 0.23
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (528 bp):
TTTTCTTTCCATTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
TTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTGACGTTCTGAATCGT
CTTCGATTTGGCAAACCTCAATGCTTTTTTTTTCCATTATTTATGGCCTAACTATAATCATTTTA
GTGAGATTTGTCCACTGTGAAGGTTTTACCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGG
GACCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCTTCGATGCCTTTCTTTCCATTGT
TTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
CACTTGTGATTTTGGGCCTATCGGGGACCATTAGTAACGTTTTGAATCGTCTTCGATTTGGCAAC
CTTCAATGCCTTTCTTTCAATTCTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
GTCAATGC
Found at i:1271 original size:309 final size:308
Alignment explanation
Indices: 611--1397 Score: 1199
Period size: 309 Copynumber: 2.6 Consensus size: 308
601 TAGTCCACTG
* *
611 TCAATGCTTTTCTTTCCTTTGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
* * * *
676 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGTCCCATTAGTGAC-TTCT
66 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTT
* *
740 GAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTTTTCCATTATTTATGGCCTAACTATAATC
131 GAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTATTTATGGCCTAACTATAATC
* * *
805 ATTTTAGTGAGATTTGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
196 ATTTTAGTGAGATTAGTCCACTATGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
* *
870 ATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCT
261 ATCGGGGACCATTAGTGACATATTGAATCGTCTTCGATTTGGCAACCT
* * *
918 TCGATGCCTTTCTTTCCATTGTTTATGGCCTAACTATTATCATTTTGGTGATG-TTAGTCCACTG
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-GATTAGTCCACTG
* * *
982 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCTCATTTGT-CCGTTT
65 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTT
*
1046 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCTAATTCTTTATGGCCTAACTATAA
130 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTC-AATTATTTATGGCCTAACTATAA
*
1111 TCATTTT-GTTTAGATTAGTCCACTATGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
194 TCATTTTAG-TGAGATTAGTCCACTATGAAG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGG
*
1175 GCCTATC-GGGACCCATTAGTGACATATTGAATCGTCTTCGATTTGTCAAACC-
257 GCCTATCGGGGA-CCATTAGTGACATATTGAATCGTCTTCGATTTGGC-AACCT
* * *
1227 TCAATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTGTTTAGATTAGTCCACTGT
1 TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
* * *
1292 GAACTTTATAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATT
66 GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTT
* *
1357 GAAATCTTCTTCGATTTGACAAACCTCAATGCTTTTCTTTC
131 G-AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTC
1398 C
Statistics
Matches: 434, Mismatches: 36, Indels: 16
0.89 0.07 0.03
Matches are distributed among these distances:
306 1 0.00
307 153 0.35
308 51 0.12
309 182 0.42
310 10 0.02
311 37 0.09
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (308 bp):
TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
GAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTT
GAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTATTTATGGCCTAACTATAATC
ATTTTAGTGAGATTAGTCCACTATGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
ATCGGGGACCATTAGTGACATATTGAATCGTCTTCGATTTGGCAACCT
Done.