Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011044.1 Corchorus olitorius cultivar O-4 contig11077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1507
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:1057 original size:156 final size:156

Alignment explanation


    Indices: 773--1507  Score: 1174
    Period size: 154  Copynumber: 4.7  Consensus size: 156

        763 CGTGTCAGAC

                        *    *                              *                
        773 TAGTCCATTGTGTAGTTTTTAGCTCATTTTGAACACTTGTTATTTTGGACCATTCGGGGCCCATT
          1 TAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT

                                                  *                          
        838 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCATAATGCTTTTCTTTCCATTGTTTATGG
         66 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG

                     *    *           
        903 CCTAACTATGATCACTTTGGTAAGAT
        131 CCTAACTATAATCATTTTGGTAAGAT

                       *                                                     
        929 TAGTCCATTGTAAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT
          1 TAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT

                *                               *                            
        994 AGTTAGGTTTTAAAAATCGTCTTCGATTTGGCAAACAACAATGCTTTTCTTTCCATTGTTTATGG
         66 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG

                              *    *  
       1059 CCTAACTATAATCATTTTAGTAATAT
        131 CCTAACTATAATCATTTTGGTAAGAT

                                    *            *                     *     
       1085 TAGTCCATTGTGAAGTTCTTAGCTAATTTTGAACACTGGTTATTTTGGGCCATTCGGGGTCCATT
          1 TAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT

                         *       *                                           
       1150 AGTTCGGTTTT--GAATCGTCATCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG
         66 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG

                              *  *   *
       1213 CCTAACTATAATCATTTTTGTTAGAC
        131 CCTAACTATAATCATTTTGGTAAGAT

                                                                        *    
       1239 TAGTCCATTGTGAAGCTT-TTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGTCCAT
          1 TAGTCCATTGTGAAG-TTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCAT

                          *     * *                                          
       1303 TAGTTCGGTTTT--GAATCGCCATCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATG
         65 TAGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATG

                                  *   *
       1366 GCCTAACTATAATCATTTTGGTTAGAG
        130 GCCTAACTATAATCATTTTGGTAAGAT

                             *                              *                
       1393 TAGTCCATTGTGAAGTTTTTAGCTCATTTTGAACACTTGTTATTTTGGACCATTCGGGGCCCATT
          1 TAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT

                                                *             
       1458 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACAACAATGCTTTTCT
         66 AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCT


Statistics
Matches: 541,  Mismatches: 34, Indels: 8
        0.93            0.06        0.01

Matches are distributed among these distances:
 153    2  0.00
 154  288  0.53
 155    2  0.00
 156  249  0.46

ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41


Consensus pattern (156 bp):   
TAGTCCATTGTGAAGTTCTTAGCTCATTTTGAACACTTGTTATTTTGGGCCATTCGGGGCCCATT
AGTTCGGTTTTAAAAATCGTCTTCGATTTGGCAAACCACAATGCTTTTCTTTCCATTGTTTATGG
CCTAACTATAATCATTTTGGTAAGAT

Done.