Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011049.1 Corchorus olitorius cultivar O-4 contig11082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2481
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Found at i:2156 original size:19 final size:19

Alignment explanation


    Indices: 2132--2188  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

       2122 CAAACTTTTC

                               
       2132 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

                               
       2151 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

                               
       2170 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

       2189 TGGGATTCAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63


Consensus pattern (19 bp):   
ATTGATCTATTTTTTTCAT

Done.