Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011064.1 Corchorus olitorius cultivar O-4 contig11097, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42


Found at i:490 original size:154 final size:154

Alignment explanation


    Indices: 1--1002  Score: 1486
    Period size: 154  Copynumber: 6.5  Consensus size: 154

                                                                             
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT

            *    *           *                           **                  
         66 GCACTTTGAAGTTTTTACCTCATTTGGAACACTTTTTATTTTGGGTATATCGGGGCCCATTAGTT
         66 CCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTT

             *                      
        131 CAGTTTTGAATCGTCTTCGATTTG
        131 CCGTTTTGAATCGTCTTCGATTTG

                   *                               *                         
        155 GCAACCCCCAATGC-TTTCTTTCCATTGTTTATGGCCTATCTATAATCATTTTGGTGAGATTAGT
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT

                             *  *                      *                     
        219 CCACTGTGAAGTTTTTAGCTAATTTGGAACACTTTTTA-TTTGTGCCTAT----GCCCATTAGTT
         66 CCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTT

                *                   
        279 CCGTATTGAATCGTCTTCGATTTG
        131 CCGTTTTGAATCGTCTTCGATTTG

            *                                                        *    *  
        303 ACAACCCT-ATATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATCAG
          1 GCAACCCTCA-ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAG

                  *                                             *    *       
        367 TCCACTCTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCTGGGCTCATTAGT
         65 TCCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGT

                                     
        432 TCCGTTTTGAATCGTCTTCGATTTG
        130 TCCGTTTTGAATCGTCTTCGATTTG

                                                                    *    *   
        457 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATCAGT
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT

                                     *                             **        
        522 CCACTGTGAAGTTTTTATCTCATTTAGAACACTTTTTATTTTGGGCCTATCGGGGAGCATTAGTT
         66 CCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTT

                                    
        587 CCGTTTTGAATCGTCTTCGATTTG
        131 CCGTTTTGAATCGTCTTCGATTTG

                        *       *                                   *    *   
        611 GCAACCCTCAATACTTTTCTCTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAGATCAGT
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT

               *            *     *                         *               *
        676 CCATTGTGAAGGTTTTAAT-TCTTTTGGAACACTTTTTATTTTGGGCCAATCGGGGCCCATTAGC
         66 CCACTGTGAA-GTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGT

                         *           
        740 TCCGTTTTGAATCATCTTCGATTTG
        130 TCCGTTTTGAATCGTCTTCGATTTG

                                                            *              * 
        765 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCTTTTTGGTGAGATTACT
          1 GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT

                   * *   *   *                *                              
        830 CCACTGTCATGTTCTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTT
         66 CCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTT

                                    
        895 CCGTTTTG--TCGTCTTCGA-TTG
        131 CCGTTTTGAATCGTCTTCGATTTG

                 *                                                           
        916 GCAACGCTCAATGTCTTTTCTTTCCTATTGTTTATGGCCTAACTATAATCTATTTTGGTGAGATT
          1 GCAACCCTCAATG-CTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATC-ATTTTGGTGAGATT

                  *               
        981 AGTCCATTGTGTAAAGTTTTTA
         63 AGTCCACTGTG--AAGTTTTTA

       1003 GCT


Statistics
Matches: 770,  Mismatches: 63, Indels: 28
        0.89            0.07        0.03

Matches are distributed among these distances:
 147    1  0.00
 148   43  0.06
 149   82  0.11
 150   10  0.01
 151   15  0.02
 152   28  0.04
 153  112  0.15
 154  464  0.60
 155    8  0.01
 156    7  0.01

ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42


Consensus pattern (154 bp):   
GCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT
CCACTGTGAAGTTTTTATCTCATTTGGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTT
CCGTTTTGAATCGTCTTCGATTTG

Done.