Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011081.1 Corchorus olitorius cultivar O-4 contig11114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41


Found at i:279 original size:154 final size:154

Alignment explanation


    Indices: 1--1238  Score: 1729
    Period size: 154  Copynumber: 8.1  Consensus size: 154

                  *    *                                  *                  
          1 GTCCACAGTGATGTTTTTAGCTCATTTGGAACACTTGTTATTTT--TCTCTATCGGGG-CTCATT
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC-CTATCGGGGAC-CATT

               **                                **                   *      
         63 AGTTTCGTTTTGAATCGTCTTCGATTTGG-AAACCTTTGATGCTTTTCTTTCCATTGTTTATGGC
         64 AGTGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTGTATGGC

                               *       
        127 CTAACTATAATCA-TTTGGGGAGATTA
        128 CTAACTATAATCATTTTGGTGAGATTA

                                                   *                         
        153 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTGTTTATGGGCCTATCGGGGACCATTA
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT-TGGGCCTATCGGGGACCATTA

                *                                                            
        218 GTGATGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTGTATGGCCT
         65 GTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTGTATGGCCT

               *                     
        283 AACGATAATCATTTTGGTGAGATTA
        130 AACTATAATCATTTTGGTGAGATTA

               *               *           *                                 
        308 GTCAACTGTGAAGTTTTTAACTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGACCATTAG
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAG

                               *                *    *              *        
        373 TGACGTTTTGAATCGTCTTAGATTTGGC-AACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
         66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTGTATGGCCT

              *                      
        437 AATTATAATCATTTTGGTGAGATTA
        130 AACTATAATCATTTTGGTGAGATTA

                  *                   *               *     *         **     
        462 GTCCACAGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATTATGGGCTTATCGGGGATTATTAG
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAG

               *          *       *                      *  *             *  
        527 TGAAGTTTTGAATCATCTTCGAGTTGGCAAACCTCAATGCTTTTCCTTACATTGTGTATGGCATA
         66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTGTATGGCCTA

                                    
        592 ACTATAATCATTTTGGTGAGATTA
        131 ACTATAATCATTTTGGTGAGATTA

                                           *                                 
        616 GTCCACTGTGAAGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGACCATTAG
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAG

                                                *    *              *        
        681 TGACGTTTTGAATCGTCTTCGATTTGGC-AACCTTCGATGCCTTTCTTTCCATTGTTTATGGCCT
         66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACC-TCAATGCTTTTCTTTCCATTGTGTATGGCCT

                                      
        745 -ACATATAATCATTTTGGTGAGATTA
        130 AAC-TATAATCATTTTGGTGAGATTA

                                                          *           *      
        770 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT--TCTCTATCGGGGCCCATTA
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC-CTATCGGGGACCATTA

              **                              *  **                  *       
        833 GTTTCGTTTTGAATCGTCTTCGATTTGG-AAACATTCGTTGCTTTTCTTTCCATTGTTTATGGCC
         65 GTGACGTTTTGAATCGTCTTCGATTTGGCAAAC-CTCAATGCTTTTCTTTCCATTGTGTATGGCC

                                      
        897 TAACTATAATCA-TTTGGTGAGATTA
        129 TAACTATAATCATTTTGGTGAGATTA

                   *       *                *         *  *                   
        922 GTCCACTATGAAGTTCTTAGCTCTATTTGGAATACTTGTTATATTCGGCCTATC-GGGACCATTA
          1 GTCCACTGTGAAGTTTTTAGCTC-ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTA

                                                   *                         
        986 GTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATTCTTTTCTTTCCATTGTGTATGGCCT
         65 GTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTGTATGGCCT

                           *  *      
       1051 AACTATAATCATTTTAGTCAGATTA
        130 AACTATAATCATTTTGGTGAGATTA

             *                                                              *
       1076 GCCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT-GGCCTATCGGGG-CCATTAA
          1 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAG

                             *                    *                          
       1139 TGACGTTTTG-ATCGT-ATCGATTTGGCAAACCTCAATTC-TTTCGTTTCCATTGTGTATGGCCT
         66 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC-TTTCCATTGTGTATGGCCT

                           *  *      
       1201 AACTATAATCATTTTAGTCAGATTA
        130 AACTATAATCATTTTGGTGAGATTA

                         
       1226 GTCCACTGTGAAG
          1 GTCCACTGTGAAG


Statistics
Matches: 975,  Mismatches: 90, Indels: 44
        0.88            0.08        0.04

Matches are distributed among these distances:
 149    4  0.00
 150   78  0.08
 151    5  0.01
 152   99  0.10
 153  206  0.21
 154  520  0.53
 155   63  0.06

ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41


Consensus pattern (154 bp):   
GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAG
TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTGTATGGCCTA
ACTATAATCATTTTGGTGAGATTA

Done.