Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011084.1 Corchorus olitorius cultivar O-4 contig11117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5227
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:1875 original size:25 final size:25

Alignment explanation


    Indices: 1847--1896  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1837 TTAGCTTGCC

                                     
       1847 GAAATCTAAACCTTTTGTATCCCCT
          1 GAAATCTAAACCTTTTGTATCCCCT

                                     
       1872 GAAATCTAAACCTTTTGTATCCCCT
          1 GAAATCTAAACCTTTTGTATCCCCT

       1897 AATGTTTCTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36


Consensus pattern (25 bp):   
GAAATCTAAACCTTTTGTATCCCCT
Done.