Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011087.1 Corchorus olitorius cultivar O-4 contig11120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2342
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30


Found at i:1823 original size:18 final size:18

Alignment explanation


    Indices: 1802--1837  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1792 TTGCAGCACA

                              
       1802 TAGTTGGTTAACTCTGAG
          1 TAGTTGGTTAACTCTGAG

                              
       1820 TAGTTGGTTAACTCTGAG
          1 TAGTTGGTTAACTCTGAG

       1838 AATAATAGAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39


Consensus pattern (18 bp):   
TAGTTGGTTAACTCTGAG
Done.