Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011091.1 Corchorus olitorius cultivar O-4 contig11124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1087
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28


Found at i:747 original size:21 final size:21

Alignment explanation


    Indices: 723--793  Score: 99
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        713 CTTAGGCATT

                         *       
        723 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *          * 
        744 TCCAATGAACTTGGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        765 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        786 TCCAATGA
          1 TCCAATGA

        794 ACTTCTAGCA


Statistics
Matches: 44,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  20    2  0.05
  21   42  0.95

ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC
Done.