Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011095.1 Corchorus olitorius cultivar O-4 contig11128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3686
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1893 original size:32 final size:32

Alignment explanation


    Indices: 1852--1915  Score: 112
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1842 ATTCAGGCAA

                                             
       1852 CAAGCAAAACCACAT-CGATAGATATGTCTTTC
          1 CAAGCAAAACCACATAC-ATAGATATGTCTTTC

                                            
       1884 CAAGCAAAACCACATACATAGATATGTCTTTC
          1 CAAGCAAAACCACATACATAGATATGTCTTTC

       1916 TTTGATGGTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  32   30  0.97
  33    1  0.03

ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25


Consensus pattern (32 bp):   
CAAGCAAAACCACATACATAGATATGTCTTTC
Done.