Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011096.1 Corchorus olitorius cultivar O-4 contig11129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3772
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Found at i:942 original size:154 final size:154
Alignment explanation
Indices: 617--1088 Score: 757
Period size: 154 Copynumber: 3.1 Consensus size: 154
607 ATTCGTATCA
* * * * * *
617 CTTTCCATAGTTTTTGGCCTAACTATATTCATTTTCGAGAGATTAGTCCACTGTGAAGGTTTTAG
1 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAG
*
682 CTCATTTGGAACACCTGTTATTTT-TGGCCTATCAGGGGCCCATTAGTGACGTTTTGAATCGTCT
66 CTCATTTGGAACACTTGTTATTTTGT-GCCTATCA-GGGCCCATTAGTGACGTTTTGAATCGTCT
* *
746 TTGATTTGGCAAACCTCAATGCTTTT
129 TCGATTTGGCAAACCTCGATGCTTTT
*
772 CTTTCGATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAG
* ** *
837 CTCATTTGGAACACTTGTTATTTTGTGCCTTTCAGGGCCCATTAGTTCCATTTTGAATCGTCTTC
66 CTCATTTGGAACACTTGTTATTTTGTGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTC
902 GATTTGGCAAACCTCGATGCTTTT
131 GATTTGGCAAACCTCGATGCTTTT
* * *
926 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTAAAATTTTTAG
1 CTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAG
*
991 CTCATTTGGAACACTTGTTATTTTGGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTC
66 CTCATTTGGAACACTTGTTATTTTGTGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTC
1056 GATTTGGCAAACCTCGATGCTTTT
131 GATTTGGCAAACCTCGATGCTTTT
1080 CTTTCCATT
1 CTTTCCATT
1089 AGTTGACGTT
Statistics
Matches: 293, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
154 204 0.70
155 88 0.30
156 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.41
Consensus pattern (154 bp):
CTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAG
CTCATTTGGAACACTTGTTATTTTGTGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGTCTTC
GATTTGGCAAACCTCGATGCTTTT
Found at i:1680 original size:154 final size:154
Alignment explanation
Indices: 1133--3772 Score: 3626
Period size: 154 Copynumber: 17.1 Consensus size: 154
1123 AAACCCTGCA
*
1133 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
** * **
1198 G-TTTTAGCTCATTTGGAACACTTGTTATTTTG-GCCTACCAGGGCCCATTCA-TGACG-TTTGA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATT-AGTTCCGTTTTGA
*
1259 ATCGTCTTCGATTTGGGAAACCTCG
130 ATCGTCTTCGATTTGGCAAACCTCG
* *
1284 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATATTCATTTTAGTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * *
1349 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGGCCTATCGAGGGCCCATTAGTGTACGTTTT
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTT-GTGCCTTTCG-GGGCCCATTAGT-TCCGTTTT
*
1414 GAATCGTCTTCGATTTGGCAAACCTCA
128 GAATCGTCTTCGATTTGGCAAACCTCG
* **
1441 ATGCGTTTTCTTTCCATTGTTTATGGCCTAAACTATAATCATTTTAGACAGATTAGTCCACTGTG
1 ATGC-TTTTCTTTCCATTGTTTATGGCCT-AACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* *
1506 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCATTTTG
64 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTG
1571 AATCGTCTTCGATTTGGCAAACCTCG
129 AATCGTCTTCGATTTGGCAAACCTCG
* **
1597 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAACCATTTTCCTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
*
1662 GTTTTTAGCTCATTTGGAACACTTGATATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
*
1727 TCGTCTTCGATTTGGCAATCCTCG
131 TCGTCTTCGATTTGGCAAACCTCG
* * * ** * *
1751 ATGCTTTTCTTTCCATTGTTTATGCCCTAACTATAATTATTTTGCTGAGATTAGGGCTCCGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * * **
1816 GTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTGACGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
* *
1881 TCGTCTTTGATTTGGCAAACCTCA
131 TCGTCTTCGATTTGGCAAACCTCG
* * **
1905 ATGCTTTTGTTTCCATTGTTTATGGCATAACTATAATCATTTTGGTGAGATTAGTCCACTACGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
*
1970 GGTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
*
2035 TCGTCTTCGATTTGGCAATCCTCG
131 TCGTCTTCGATTTGGCAAACCTCG
*
2059 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCAATTTT-GTGAGTTTAGTCCACTGTGA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATC-ATTTTGGTGAGATTAGTCCACTGTGA
* * * * ** ** *
2123 A-ATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGGCCGTTTAGTGACGTTTTGC
65 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGA
* * * *
2187 ACCGTCTTCGATTTGACAAACTTCA
130 ATCGTCTTCGATTTGGCAAACCTCG
*
2212 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* **
2277 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGAG-CTTATCGGGGCCCATTAGTGACGTTTTGA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTT-TCGGGGCCCATTAGTTCCGTTTTGA
* * *
2341 ATCGTCTTCGATATGGAAAGAAACCCTCT
130 ATCGTCTTCGATTTGG---CAAA-CCTCG
* * * *
2370 ATGCTTTTCTTTCCATTGTTTATGGCCTAATTATTATCATTTTGGGGATATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * *
2435 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
* *
2500 TCGTCTTCGATTTCGGCAACCCTCA
131 TCGTCTTCGATTT-GGCAAACCTCG
* * *
2525 ATGC-TTTC-TTCCATTG-TTATGGCCTAACTATAATCATTTTGGTGAGATTAGTACACTATGTA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * *
2587 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
* *
2652 TCGTCTTCGATTTGGCAACCCTCT
131 TCGTCTTCGATTTGGCAAACCTCG
* * * * *
2676 ATTCTTTGCTTTCCATTGTTTATGGCCTAATTATTATCATTTTGGTGATATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * * **
2741 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
* *
2806 TCGTCTTCGATTTGGCAACCCTCA
131 TCGTCTTCGATTTGGCAAACCTCG
* * *
2830 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTATAGTGA-ATTTAGTTCACTGTGA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA-TTAGTCCACTGTGA
* * * * **
2894 A-ATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTGTCAGGG-CCATTAGTGACGTTTTGA
65 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGA
* * * *
2957 ATCGTCTTCAATTTGACAAACTTCA
130 ATCGTCTTCGATTTGGCAAACCTCG
* * *
2982 AAGCTTTTCTTTCCATTGTTTATGGCCTATCTATAATCATTTTAGTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* *
3047 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTG-CTTTAGGGGCCCATTAGTTCTGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
*
3111 TCGTCTACGATTTGG-AAACCCTCG
131 TCGTCTTCGATTTGGCAAA-CCTCG
* * *
3135 ATGGC-TTTCTTTCCATTGTTTAAGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTTTGA
1 AT-GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* * * * **
3199 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCAGGGTCTATTAGTGACGTTTTGA
65 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGA
* *
3264 ATCGTCTTCGATATGGAAAGAATCCCTCG
130 ATCGTCTTCGATTTGG-CA-AA--CCTCG
* * **
3293 ATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAACCATTTTCCTGAGATTAGTCCACTGTGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* *
3358 GTTTTTAGCTCATTTGGAACACTTGATATTTTGTGCCTTTCGGGGCCCATTAGTTCCCTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
*
3423 TCGTCTTCGATTTGGCAATCCTCG
131 TCGTCTTCGATTTGGCAAACCTCG
* * * *
3447 ATGCTTTTCTTTCCATTGTTTATGCCCTAACTATAATCATTTTGCTGAGATTTGTCCACTATGAA
1 ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* * * * *
3512 GGTTTTAGCTCATTTGGAACGCTTGTTATTTTGTGCTTTTCGGGGACCATTAGTTCTGTTTTGAA
66 GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
3577 TCGTCTTCGATTTGG-AAACCATCG
131 TCGTCTTCGATTTGGCAAACC-TCG
* *
3601 ATGCATTTCTTTCCATTGTTTCA-GGCCTAACTATAATCATTTTGTTGAGATTAGTCCACTGTGA
1 ATGCTTTTCTTTCCATTGTTT-ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* *
3665 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTTCCTTTCGGGGCCCATTAGTTCTGTTTTGT
65 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTG-
*
3730 AATCGTCTTCGATTTGG-AAACCCTAG
129 AATCGTCTTCGATTTGGCAAA-CCTCG
*
3756 ATGCATTTCTTTCCATT
1 ATGCTTTTCTTTCCATT
Statistics
Matches: 2232, Mismatches: 219, Indels: 72
0.88 0.09 0.03
Matches are distributed among these distances:
151 78 0.03
152 262 0.12
153 349 0.16
154 992 0.44
155 87 0.04
156 45 0.02
157 52 0.02
158 297 0.13
159 70 0.03
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (154 bp):
ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
GTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAA
TCGTCTTCGATTTGGCAAACCTCG
Found at i:2717 original size:771 final size:766
Alignment explanation
Indices: 1084--3745 Score: 3767
Period size: 771 Copynumber: 3.4 Consensus size: 766
1074 GCTTTTCTTT
* * * * *
1084 CCATTAGTTGACGTTCTGAATCGTCTTCGATATGGAAAGAAACCCTGCAATGCTTTTCTTTCCAT
1 CCATTAGTT-CCGTTTTGAATCGTCTTCGATTTGG---CAAA-CCT-CAATGCTTTGCTTTCCAT
* *
1149 TGTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAA-GTTTTAGCTCATTTG
60 TGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGGTTTTAGCTCATTTG
* *
1213 GAACACTTGTTATTTTG-GCCTACCAGGGCCCATTCA-TGACG-TTTGAATCGTCTTCGATTTGG
125 GAACACTTGTTATTTTGTGCCTATCGGGGCCCATT-AGTGACGTTTTGAATCGTCTTCGATTTGG
* *
1275 GAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATATTCATTTTAGTGAGATTAGTC
189 CAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-GTGAGATTAGTC
* * *
1340 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGGCCTATCGAGGGCCCATTAGT
253 CACTGTGAAGATTTTAGCTCATTTGGAACACCTGTTATTTT-GTGCCTATC-AGGG-CCATTAGT
* *
1405 GTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCGTTTTCTTTCCATTGTTTATGGCCT
315 G-ACGTTTTGAATCGTCTTCGATTTGACAAACTTCAATGC-TTTTCTTTCCATTGTTTATGGCCT
**
1470 AAACTATAATCATTTTAGACAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
378 -AACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* * *
1535 ATTTTGTGTCTTTCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCGATTTGGCAAA-CCTCGAT
442 ATTTTGTG-CTTTCGGGGCCCATTAG-TACGTTTTGAATCGTCTTCGA-TTGGGAAACCCTCGAT
* *
1599 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAACCATTTTCCTGAGATTAGTCCACTGTGAAGT
504 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGT
* * *
1664 TTTTAGCTCATTTGGAACACTTGATATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATC
569 TTTTAGCTCATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTTCCGTTTTGAATC
* * *
1729 GTCTTCGATTTGGCAATCCTCGATGCTTTTCTTTCCATTGTTTATGCCCTAACTATAATTATTTT
634 GTCTTCGATTTGGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT
** * * *
1794 GCTGAGATTAGGGCTCCGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTTTCGA
699 GCTGAGATTAGTACACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGA
1859 GGC
764 GGC
** *
1862 CCATTAGTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAATGCTTTTG-TTTCCATTGTTT
1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTGCTTTCCATTGTTT
* *
1926 ATGGCATAACTATAATCATTTTGGTGAGATTAGTCCACTACGAAGGTTTTAGCTCATTTGGAACA
65 ATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGGTTTTAGCTCATTTGGAACA
* ** *
1991 CTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAATCC
130 CTTGTTATTTTGTGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACC
*
2056 TCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCAATTTTGTGAGTTTAGTCCACTGT
195 TCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATC-ATTTTGTGAGATTAGTCCACTGT
*
2121 GAA-ATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGGCCGTTTAGTGACGTTTT
259 GAAGATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGGCC-ATTAGTGACGTTTT
* *
2185 GCACCGTCTTCGATTTGACAAACTTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATC
323 GAATCGTCTTCGATTTGACAAACTTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATC
*
2250 ATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGAGCTT
388 ATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCTT
*
2315 ATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATATGGAAAGAAACCCTCTATGCTTTTCT
453 -TCGGGGCCCATTAGT-ACGTTTTGAATCGTCTTCGAT-TGG---GAAACCCTCGATGCTTTTCT
* * ** *
2380 TTCCATTGTTTATGGCCTAATTATTATCATTTTGGGGATATTAGTCCACTGTGAAGTTTTTAGCT
512 TTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGCT
*
2445 CATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA
577 CATTTGGAACACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA
* *
2510 TTTCGGCAACCCTCAATGC-TTTC-TTCCATTG-TTATGGCCTAACTATAATCATTTTGGTGAGA
642 TTT-GGCAACCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGA
* * *
2572 TTAGTACACTATGTAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGC
706 TTAGTACACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGC
* * *
2633 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCTATTCTTTGCTTTCCATTGTTTA
1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTGCTTTCCATTGTTTA
* * * * *
2698 TGGCCTAATTATTATCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAC
66 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGGTTTTAGCTCATTTGGAACAC
* * *
2763 TTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAACCCT
131 TTGTTATTTTGTGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCT
* * *
2828 CAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTATAGTGA-ATTTAGTTCACTGT
196 CGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATT-TTGTGAGA-TTAGTCCACTGT
*
2892 GAA-ATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTGTCAGGGCCATTAGTGACGTTTTG
259 GAAGATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGGCCATTAGTGACGTTTTG
* * *
2956 AATCGTCTTCAATTTGACAAACTTCAAAGCTTTTCTTTCCATTGTTTATGGCCTATCTATAATCA
324 AATCGTCTTCGATTTGACAAACTTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA
3021 TTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCTTT
389 TTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCTTT
* * * *
3086 AGGGGCCCATTAGTTCTGTTTTGAATCGTCTACGATTTGGAAACCCTCGATGGC-TTTCTTTCCA
454 CGGGGCCCATTAGTAC-GTTTTGAATCGTCTTCGATTGGGAAACCCTCGAT-GCTTTTCTTTCCA
* *
3150 TTGTTTAAGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTTTGAAGTTTTTAGCTCATTT
517 TTGTTTATGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
* * ** *
3215 GGAACACTTGTTATTTTGTGCCTATC-AGGGTCTATTAGTGACGTTTTGAATCGTCTTCGATATG
582 GGAACACTTGTTATTTTGTGCCTATCGA-GGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTG
* * * *
3279 GAAAGAATCCCTCGATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAACCATTTTCCTGAGAT
646 G---CAA-CCCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGAT
* * * *
3344 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGATATTTTGTGCCTTTCGGGGC
707 TAGTACACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGC
* * * *
3404 CCATTAGTTCCCTTTTGAATCGTCTTCGATTTGGCAATCCTCGATGCTTTTCTTTCCATTGTTTA
1 CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTGCTTTCCATTGTTTA
* * * *
3469 TGCCCTAACTATAATCATTTTGCTGAGATTTGTCCACTATGAAGGTTTTAGCTCATTTGGAACGC
66 TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGGTTTTAGCTCATTTGGAACAC
* * * *
3534 TTGTTATTTTGTGCTTTTCGGGGACCATTAGT-TCTGTTTTGAATCGTCTTCGATTTGG-AAACC
131 TTGTTATTTTGTGCCTATCGGGGCCCATTAGTGAC-GTTTTGAATCGTCTTCGATTTGGCAAACC
*
3597 ATCGATGCATTTCTTTCCATTGTTTCA-GGCCTAACTATAATCATTTTGTTGAGATTAGTCCACT
195 -TCGATGCTTTTCTTTCCATTGTTT-ATGGCCTAACTATAATCATTTTG-TGAGATTAGTCCACT
* * * * * *
3661 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTTCCTTTCGGGGCCCATTAGT-TCTGT
257 GTGAAGATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGG-CCATTAGTGAC-GT
3725 TTTGTAATCGTCTTCGATTTG
320 TTTG-AATCGTCTTCGATTTG
3746 GAAACCCTAG
Statistics
Matches: 1695, Mismatches: 152, Indels: 78
0.88 0.08 0.04
Matches are distributed among these distances:
764 3 0.00
765 134 0.08
766 2 0.00
767 2 0.00
768 17 0.01
769 140 0.08
770 183 0.11
771 695 0.41
772 121 0.07
773 201 0.12
774 77 0.05
775 85 0.05
776 5 0.00
777 22 0.01
778 8 0.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (766 bp):
CCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTGCTTTCCATTGTTTA
TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGGTTTTAGCTCATTTGGAACAC
TTGTTATTTTGTGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCT
CGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGTGAGATTAGTCCACTGTGA
AGATTTTAGCTCATTTGGAACACCTGTTATTTTGTGCCTATCAGGGCCATTAGTGACGTTTTGAA
TCGTCTTCGATTTGACAAACTTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATT
TTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGCTTTCG
GGGCCCATTAGTACGTTTTGAATCGTCTTCGATTGGGAAACCCTCGATGCTTTTCTTTCCATTGT
TTATGGCCTAACTATAATCATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
CACTTGTTATTTTGTGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAC
CCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGCTGAGATTAGTACACT
GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGC
Done.