Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001110.1 Corchorus olitorius cultivar O-4 contig01110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1396
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.44


Found at i:846 original size:28 final size:30

Alignment explanation


    Indices: 793--848  Score: 80
    Period size: 28  Copynumber: 1.9  Consensus size: 30

        783 TCTAATATCC

                           * *            
        793 TTATAATTATTTAATTTTTACTTTTATATA
          1 TTATAATTATTTAATATATACTTTTATATA

                                        
        823 TTATAATT-TTTAA-ATATACTTTTATA
          1 TTATAATTATTTAATATATACTTTTATA

        849 GTTTTACTCA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  28   11  0.46
  29    5  0.21
  30    8  0.33

ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61


Consensus pattern (30 bp):   
TTATAATTATTTAATATATACTTTTATATA
Done.