Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011104.1 Corchorus olitorius cultivar O-4 contig11137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4534
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27


Found at i:3887 original size:21 final size:21

Alignment explanation


    Indices: 3861--3904  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3851 AGTCACCCGT

                                 
       3861 CTTTAGTGGAAATGGGTTTCA
          1 CTTTAGTGGAAATGGGTTTCA

                                 
       3882 CTTTAGTGGAAATGGGTTTCA
          1 CTTTAGTGGAAATGGGTTTCA

              
       3903 CT
          1 CT

       3905 CTCTGGTTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39


Consensus pattern (21 bp):   
CTTTAGTGGAAATGGGTTTCA

Found at i:4057 original size:22 final size:22

Alignment explanation


    Indices: 4029--4072  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4019 CAAGATCGAC

                                  
       4029 TGAACACAAACCTTAATAGAGT
          1 TGAACACAAACCTTAATAGAGT

                                  
       4051 TGAACACAAACCTTAATAGAGT
          1 TGAACACAAACCTTAATAGAGT

       4073 GCCGATTCAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23


Consensus pattern (22 bp):   
TGAACACAAACCTTAATAGAGT
Done.