Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011109.1 Corchorus olitorius cultivar O-4 contig11142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1952
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:365 original size:15 final size:15

Alignment explanation


    Indices: 345--375  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        335 TTATCTGAGA

                           
        345 AATCCTATTTTTAAT
          1 AATCCTATTTTTAAT

                           
        360 AATCCTATTTTTAAT
          1 AATCCTATTTTTAAT

             
        375 A
          1 A

        376 GGGGATCTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52


Consensus pattern (15 bp):   
AATCCTATTTTTAAT
Done.