Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011111.1 Corchorus olitorius cultivar O-4 contig11144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7171
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27


Found at i:1015 original size:17 final size:17

Alignment explanation


    Indices: 993--1026  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        983 CCGACAGGGC

                             
        993 CTGAAGCTGACTATTCT
          1 CTGAAGCTGACTATTCT

                             
       1010 CTGAAGCTGACTATTCT
          1 CTGAAGCTGACTATTCT

       1027 ATAGACCGGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35


Consensus pattern (17 bp):   
CTGAAGCTGACTATTCT
Done.