Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011115.1 Corchorus olitorius cultivar O-4 contig11148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41061

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6484--6542
29
2.0
30
93
3
102
32
16
25
25
1.97
9174--9204
15
2.1
15
100
0
62
61
12
6
19
1.53
9232--9266
14
2.5
14
90
0
61
68
0
8
22
1.16
25056--25113
15
3.9
15
72
18
59
51
5
0
43
1.24
25057--25125
30
2.3
30
87
2
93
52
7
1
39
1.38
27433--27457
2
12.5
2
100
0
50
48
0
0
52
1.00
27991--28276
140
2.0
142
89
5
443
41
9
10
39
1.71
29943--30005
30
2.2
28
82
5
72
30
6
17
46
1.73
37242--37274
16
2.0
17
88
5
50
48
0
0
51
1.00
41027--41061
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!