Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011116.1 Corchorus olitorius cultivar O-4 contig11149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20584

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1716--1758
19
2.2
20
84
12
54
32
6
0
60
1.23
2113--2309
103
1.9
101
88
3
297
40
7
4
48
1.51
4611--4635
2
12.5
2
100
0
50
48
0
0
52
1.00
9548--9580
16
2.1
16
100
0
66
18
6
45
30
1.73
9626--9651
11
2.4
11
100
0
52
26
7
15
50
1.71
10148--10208
27
2.2
27
91
2
104
18
21
32
27
1.96
10733--10791
19
3.1
19
80
9
75
49
18
5
27
1.68
13254--13417
82
2.0
82
100
0
328
34
12
7
46
1.69
16012--16303
99
2.9
102
91
3
482
38
10
23
27
1.88
18629--18658
15
1.9
16
93
6
53
53
0
6
40
1.27
19612--19844
131
1.8
126
87
6
342
48
2
13
36
1.54

Tables:   1

The End!