Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011122.1 Corchorus olitorius cultivar O-4 contig11155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58392

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5225--5283
31
1.9
31
100
0
118
40
6
22
30
1.79
9814--9857
22
2.0
22
100
0
88
45
18
4
31
1.69
15148--15184
14
2.6
14
100
0
74
37
13
13
35
1.84
23169--23216
13
3.7
13
78
8
53
62
4
0
33
1.14
23169--23223
27
2.1
26
83
10
67
61
3
0
34
1.13
36827--36891
29
2.2
30
77
2
78
47
16
15
20
1.82
39487--39561
31
2.5
31
80
2
89
46
16
18
18
1.84
44574--44620
23
2.0
23
83
4
58
46
21
12
19
1.82
48009--48044
9
4.2
9
86
13
58
0
16
0
83
0.65
48006--48046
10
3.8
11
81
12
50
0
19
0
80
0.71
48012--48045
16
2.1
17
94
5
61
0
14
0
85
0.60
49902--49961
30
2.0
30
96
0
111
23
21
16
38
1.93
55750--55781
10
3.2
10
100
0
64
62
9
9
18
1.52
57512--57642
30
4.3
31
75
5
151
26
21
15
36
1.93
57546--57701
60
2.6
60
90
2
233
28
18
16
36
1.93

Tables:   1

The End!