Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011123.1 Corchorus olitorius cultivar O-4 contig11156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48029

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
756--1256
252
2.0
249
94
1
869
35
17
20
26
1.95
6113--6142
13
2.3
13
94
0
51
40
0
0
60
0.97
15021--15080
31
1.9
31
82
0
75
25
11
13
50
1.75
18427--18481
29
1.9
28
85
3
74
41
14
25
18
1.88
25160--25209
22
2.2
22
89
7
73
12
4
16
68
1.35
27403--27476
29
2.5
30
78
8
80
28
24
13
33
1.93
32045--32082
18
2.1
19
85
5
51
28
28
2
39
1.70
32986--33088
49
2.1
49
98
1
199
32
15
11
40
1.83
34679--34712
17
2.0
17
94
0
59
50
17
20
11
1.77
35128--35248
2
65.5
2
70
23
88
48
4
0
45
1.29
35107--35204
29
3.5
27
78
15
101
55
1
0
43
1.06
35107--35204
44
2.3
43
85
7
128
55
1
0
43
1.06
35150--35249
29
3.5
28
78
10
103
48
6
1
45
1.34
35128--35248
13
8.5
14
74
17
63
48
4
0
45
1.29
35128--35248
27
4.6
26
74
17
99
48
4
0
45
1.29
40214--40331
45
2.6
45
94
0
200
27
24
17
29
1.97
40863--41264
68
6.0
68
86
6
572
7
25
27
39
1.82
40873--41380
195
2.7
192
89
4
753
7
26
27
38
1.82
41209--41313
49
2.1
49
92
3
176
9
28
23
38
1.86
41141--41430
117
2.5
117
91
0
472
8
27
26
37
1.85
41326--41448
49
2.5
49
87
0
183
8
29
25
37
1.84
42179--46527
333
13.2
331
86
4
5779
36
17
15
31
1.90

Tables:   1

The End!