Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011125.1 Corchorus olitorius cultivar O-4 contig11158, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76920

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
568--888
20
16.0
20
70
5
227
28
28
6
36
1.82
568--887
40
8.0
40
94
2
491
28
28
6
36
1.81
952--1195
122
2.0
122
87
3
357
41
22
22
13
1.89
13813--13848
18
1.9
19
88
5
56
63
2
25
8
1.36
13812--13854
18
2.3
18
80
8
50
60
2
27
9
1.40
15327--15418
40
2.2
40
96
3
166
34
19
3
42
1.68
15523--15554
12
2.7
12
95
0
55
56
0
0
43
0.99
16149--16187
18
2.2
17
86
4
51
12
5
7
74
1.20
20071--20120
25
2.0
25
100
0
100
44
32
4
20
1.70
36331--36393
31
2.0
31
100
0
126
30
12
19
38
1.89
41325--41421
33
2.9
33
96
0
176
20
9
46
23
1.79
41671--41722
27
1.9
27
84
0
68
13
1
46
38
1.54
44749--44775
8
3.4
8
100
0
54
11
25
40
22
1.87
73666--73703
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!