Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011130.1 Corchorus olitorius cultivar O-4 contig11163, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2500
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24


Found at i:384 original size:29 final size:29

Alignment explanation


    Indices: 342--399  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        332 GGAAATAGCC

                                         
        342 TAATCAGTGTGTAGTCAATCTCTATAATT
          1 TAATCAGTGTGTAGTCAATCTCTATAATT

                                         
        371 TAATCAGTGTGTAGTCAATCTCTATAATT
          1 TAATCAGTGTGTAGTCAATCTCTATAATT

        400 ACGTACAAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41


Consensus pattern (29 bp):   
TAATCAGTGTGTAGTCAATCTCTATAATT
Done.