Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011132.1 Corchorus olitorius cultivar O-4 contig11165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2443
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:1292 original size:20 final size:20

Alignment explanation


    Indices: 1267--1305  Score: 78
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1257 TCAACTCGCC

                                
       1267 AATCCTATGTTTCTGGGATA
          1 AATCCTATGTTTCTGGGATA

                               
       1287 AATCCTATGTTTCTGGGAT
          1 AATCCTATGTTTCTGGGAT

       1306 TCGGTCTGTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41


Consensus pattern (20 bp):   
AATCCTATGTTTCTGGGATA

Found at i:1838 original size:12 final size:13

Alignment explanation


    Indices: 1818--1846  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

       1808 GGACCCAATA

                         
       1818 AATTCTTAATTGG
          1 AATTCTTAATTGG

                         
       1831 AATT-TTAATTGG
          1 AATTCTTAATTGG

                
       1843 AATT
          1 AATT

       1847 AAAGGATCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48


Consensus pattern (13 bp):   
AATTCTTAATTGG
Done.