Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011136.1 Corchorus olitorius cultivar O-4 contig11169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3991
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:184 original size:17 final size:18

Alignment explanation


    Indices: 152--186  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

        142 CACATCATAC

                     *        
        152 ATACTATAAGAATGATCT
          1 ATACTATAAAAATGATCT

                              
        170 ATACTA-AAAAATGATCT
          1 ATACTATAAAAATGATCT

        187 CTCTTTAGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31


Consensus pattern (18 bp):   
ATACTATAAAAATGATCT
Done.