Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001115.1 Corchorus olitorius cultivar O-4 contig01115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:523 original size:33 final size:33

Alignment explanation


    Indices: 474--567  Score: 116
    Period size: 33  Copynumber: 2.8  Consensus size: 33

        464 AGTAATTCTG

                                   *         
        474 AACCTAATTTGAGTGTTGTTTGCAATGACACGA
          1 AACCTAATTTGAGTGTTGTTTGCGATGACACGA

              *  **             * *     *  * 
        507 AATCTGTTTTGAGTGTTGTTAGTGATGATACTA
          1 AACCTAATTTGAGTGTTGTTTGCGATGACACGA

                                        
        540 AACCTAATTTGAGTGTTGTTTGCGATGA
          1 AACCTAATTTGAGTGTTGTTTGCGATGA

        568 ACTTTCAATG


Statistics
Matches: 48,  Mismatches: 13, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  33   48  1.00

ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39


Consensus pattern (33 bp):   
AACCTAATTTGAGTGTTGTTTGCGATGACACGA
Done.