Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011150.1 Corchorus olitorius cultivar O-4 contig11183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5593
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:806 original size:26 final size:26

Alignment explanation


    Indices: 770--822  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        760 CTGGGTGTCG

                                      
        770 TTCATAACTTTTACATTCTTTTCAGT
          1 TTCATAACTTTTACATTCTTTTCAGT

                                      
        796 TTCATAACTTTTACATTCTTTTCAGT
          1 TTCATAACTTTTACATTCTTTTCAGT

             
        822 T
          1 T

        823 AAGGACAAGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.23, C:0.19, G:0.04, T:0.55


Consensus pattern (26 bp):   
TTCATAACTTTTACATTCTTTTCAGT
Done.