Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011151.1 Corchorus olitorius cultivar O-4 contig11184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:439 original size:19 final size:19

Alignment explanation


    Indices: 415--456  Score: 84
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        405 AAAGAGGTCC

                               
        415 TTCTACCGTCTTCAATTCT
          1 TTCTACCGTCTTCAATTCT

                               
        434 TTCTACCGTCTTCAATTCT
          1 TTCTACCGTCTTCAATTCT

                
        453 TTCT
          1 TTCT

        457 CCTTTCGCAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   23  1.00

ACGTcount: A:0.14, C:0.31, G:0.05, T:0.50


Consensus pattern (19 bp):   
TTCTACCGTCTTCAATTCT
Done.